Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02512 ATGTGTGTGAGAAGAGAGAGGAGAGGAGTGTGCCAGGGCTATGCGATAGTGGGAGAGAGGGGTCATGGAGAAGGTTTAAGTGTATGTCTACAATGCACGGGGCCGGCATCAGAGTTGGCATCTACGGTGCATGGAATCGTCACAGCTCTCCAGGATCTATACAGGGCCTTAAACAACCCTCTAGCGCTGAAAGGATGGAACGGTAATGATCCTTGTGAGGAATCTTGGACGGGAATAGCATGTTCCGGGTCATCAGTTATACACATTGATGTCAGTTTTAACAACATACTTGGGGAAATCCCTCAGGGTTTACCTCCAAATGCAACACATATGAATTTAAGCCACAATTTCTTGTATGGACCCATTGGGAACGTGTTTACTGGCTTAGATAATCTCAAAGAAATATTCCTGCAGAACAACAGATTCACCGGATCAGTCACCTACCTGGCTGAGCTTCCACTCATTGATTTGAACATTCAAGACAATCTGTTTAGCGGCCTTCTTCCACAGCATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTCCAAACCGTGGACAACTCTCCTCCCTGGGCATTTCCCTTGGACAACGTACCCCTTGAGCACAATACTAGTCGCCCACCCATAACTCAGGCAAATGCCATCGAGAACTACGCTCCTATTAGGGTAAGGAAACAAAAGAAGAAACATATCAGTCCCGGAGGAATAGCTTTTATGGTCGGTACAGGAACTTTATTGGCAACCGGTTTCGCTCTCTTCATTGCGATCCGTTTGAATAAGCTTTATACAAAGAGACTGGAGAACTATGAAAGCGACCACAGTGCATTGCCTTCTTGTCCAATCAGTGCGACCAAAGAAGATTCTACTACGGCAATAGACGAGAGCCTTCAAATCCCACCTTATAATGCTGCATCCATTTTGGGTCCAAGGCGATTAACTTCCCAACCCCATAAAAGAACTGGGGAAATATCAAGAAAAAGCTTTTCCGGAAGAGACAGATTCAATGGAAGGATAAAGGTTTATACAGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCATGAAGACAACCTTCTGGGAGAAGGATCGCTTGGTCCTGTTTATAGAGCTGAATTTCCAAATAACAAGGTTTTAGCTGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTTGTGAGCACGGCTTCCCGTTTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCATGGACAACATCTTCTTGTCTTTGAGTATGTCAGAAATTTAACTCTAGATGATGCTCTTCATAGTACAGCATACAAACCTTTATCGTGGGGCACACGTCTCCGGATCGCTCTAGGTGTTGGTCAGGCCCTGGACTATTTGCACTCGACGTTCTCCCCTCCTGTCGCCCATGGCAAATTAAAGGCTACCAATGTTCTACTGGACGAAAACCTCATGCCTTGTCTAACTGACTGTGGCTTGGCTATTCTGAGACCACTGACAAGCAATAAAGCCAAAAACCGGGCTTCCGAGATTGATATTAGAGATACAGGATACAGTTCACCTGACCATGGCCAACCAGGAGTTGGCAGCACGAAGAGCGACATCTTTGCCTTTGGCGTGTTGCTTCTTGAACTATTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCAAGGGAAGAGCACTATCTGGCAAAGTGGGCTTCATCAAGGCTTCATGATAGTGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAACGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGCCTTCAGCCCGTGAAGCAATTTCGACCTCCAATGTCTGAAATCGTGGACAATCTTGTATCATTTTCTCAAAAGCTTGTTTCAGAGAGTGGTGAAGCAGATGAAACTGAACTTGATCCACTTGACATGTCTTTTCACACAACTATCTCCCGGTTTAACGGTTCACCTGCTCTGAGCTATGTATCCGCCTGA 2031 0.452 MCVRRERRGVCQGYAIVGERGHGEGLSVCLQCTGPASELASTVHGIVTALQDLYRALNNPLALKGWNGNDPCEESWTGIACSGSSVIHIDVSFNNILGEIPQGLPPNATHMNLSHNFLYGPIGNVFTGLDNLKEIFLQNNRFTGSVTYLAELPLIDLNIQDNLFSGLLPQHFQSIPNLWIGGNKFQTVDNSPPWAFPLDNVPLEHNTSRPPITQANAIENYAPIRVRKQKKKHISPGGIAFMVGTGTLLATGFALFIAIRLNKLYTKRLENYESDHSALPSCPISATKEDSTTAIDESLQIPPYNAASILGPRRLTSQPHKRTGEISRKSFSGRDRFNGRIKVYTVAEVQLVTNSFHEDNLLGEGSLGPVYRAEFPNNKVLAVKNINMAGMSFSEEEKFLDVVSTASRLKHPNIVSLKGYCLEHGQHLLVFEYVRNLTLDDALHSTAYKPLSWGTRLRIALGVGQALDYLHSTFSPPVAHGKLKATNVLLDENLMPCLTDCGLAILRPLTSNKAKNRASEIDIRDTGYSSPDHGQPGVGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEHYLAKWASSRLHDSDSLEQMVDPAIKRTFSSKALSRYADIISLCLQPVKQFRPPMSEIVDNLVSFSQKLVSESGEADETELDPLDMSFHTTISRFNGSPALSYVSA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02512 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 45 636 IPR046959 -
Vian3g02512 676 Gene3D Ribonuclease Inhibitor 47 233 IPR032675 -
Vian3g02512 676 Gene3D Transferase(Phosphotransferase) domain 1 435 654 - -
Vian3g02512 676 Pfam Leucine rich repeat N-terminal domain 48 82 IPR013210 -
Vian3g02512 676 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 321 433 - -
Vian3g02512 676 SUPERFAMILY Protein kinase-like (PK-like) 336 632 IPR011009 -
Vian3g02512 676 SUPERFAMILY L domain-like 61 188 - -
Vian3g02512 676 ProSiteProfiles Protein kinase domain profile. 356 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02512 676 Pfam Protein tyrosine and serine/threonine kinase 359 632 IPR001245 GO:0004672|GO:0006468
Vian3g02512 676 Gene3D Phosphorylase Kinase; domain 1 318 433 - -
Vian3g02512 676 FunFam Leucine-rich repeat receptor-like protein kinase 434 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02512 Vian-Chr3 39101088 39110844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02512 47 676 Strubbelig Receptor Gene Family AT5G06820 49.717 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vian3g02512 PK_Tyr_Ser-Thr 5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02512 - - vum:124845744 1109.36