Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02509 ATGAGGCCACCACCAACTCTCAATATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCACCCAATTCCAAGGTTAGCATGGAGTTACCCTCCACGCACACCAGTGGCTCCAAGAGACCAGGGTCATCCATAACCAAGCCCAACCCTCACACCGAATTAGCTCCATCTGCACCTGAACCACCCAAAGCTGTTAAGCGAGAGGGAAATCGCAAGGGAGCAACCTCAAGTTCTGAGCAGGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGAAAAAGCAGGCTCAGGAAAAAGGGCATATTAATGGGTGGAAATGCCCTTCTGGGAGGTGAGCAAGGTTTTCCTATGGCTATGACTGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCGAGATGGTTAGAGGAGCACCAGCGTCTAGTGTGCGAACTAAGAGGTGCAGTGCAAGAACACCTCCATGAAAATGAGCTTCGGTTATATGTGGACAGTTGTTTGGCTCACTACGACCAAGTAATGAACCTGAAGAGCATAGTGGCCAAAACAGACGTATTCCACCTTGTTTTTGGCATGTGGAAGACCCCAGCCGAGCGTTGCTTCATGTGGATTGGTGGTTTCAGACCCTCTGAACTCATCAAGGAAGGATTGTTATGTGAATCCATTGACTTTTATGATGAAGGGGTAGAGTTAGGCTTGATTCCTGTTAAGCCATGCCTTTCACTTGAATTTTCTGGTTGGAATGAGAAACCAACTAAGAAAGGAAAAAGAGTTATAGCAAAGTGCATGACACGGATTATTCTGGGTCAAATCGAGCCTCTCACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCCACACAAGAGGCAGAAGAGGCTCTTTCACAAGGACTCGATGCCCTAAACCAATCTCTCTCGGACACTTTAACATCGGACTCTCTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAGATGGCTGTGGCAATGAACAAACTCTCCACTCTTGAAAGTTTTGCGAGACAGGCTGATAATCTGAGGCACCAAACCATTCACCGTCTGCAGCAACTTCTAACCACGCGCCAGGCAGCAAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGTCTTCGAGCTCTCAGTTCTCTCTGGTTCACGCGCCCTCGCCAAGACTAG 1215 0.4807 MRPPPTLNIFPSQPMHAVPPPNSKVSMELPSTHTSGSKRPGSSITKPNPHTELAPSAPEPPKAVKREGNRKGATSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKGILMGGNALLGGEQGFPMAMTGISSEAAMFDVEYARWLEEHQRLVCELRGAVQEHLHENELRLYVDSCLAHYDQVMNLKSIVAKTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKEGLLCESIDFYDEGVELGLIPVKPCLSLEFSGWNEKPTKKGKRVIAKCMTRIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSDTLTSDSLWCPPNMTNYMGQMAVAMNKLSTLESFARQADNLRHQTIHRLQQLLTTRQAARCLVAISEYFHRLRALSSLWFTRPRQD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02509 404 Pfam Seed dormancy control 153 224 IPR025422 GO:0006351|GO:0043565
Vian3g02509 404 ProSiteProfiles DOG1 domain profile. 135 400 IPR025422 GO:0006351|GO:0043565
Vian3g02509 404 MobiDBLite consensus disorder prediction 1 91 - -
Vian3g02509 404 MobiDBLite consensus disorder prediction 25 50 - -
Vian3g02509 404 PANTHER TRANSCRIPTION FACTOR TGA9 14 403 - -
Vian3g02509 404 MobiDBLite consensus disorder prediction 1 18 - -
Vian3g02509 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02509 Vian-Chr3 39050744 39055964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02509 1 404 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 54.176 1.84e-152 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian3g02509 DOG1 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02509 K14431 - gmx:100800059 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01990 2 39507567 39513569 Vian3g02509 3 39050744 39055964 PCT