Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02504 ATGGATTCCCATACCCATCATCATCAGGATTACCAGCTTCATCTCCATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCCAGTTCGCTCTTTTCAAATCTCACACCTTTTGTCAGCTACGGTGCTGACACTGCTGCTTCAAGTAGCTTCCGGGAGTTGGAAGAAAACAGCAACCAAAAGTGTTGTTCTAAGGATTTCAGTTTGATGAATTCGCATAAGGGTTATGGTGGAGGGTTGCCACCTCACTATCCAAGACATGGTTCTTCATCTGCTACTTCGAGTTCTTCTATGGAAGGGCCTTATGGGTTGGTTGGTTCAATGGGAATGGATCATGAAGCTCCAAATAAGGGCTTCGGGTCAAGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAATGTTTCATTCCAAAATGGCTTTGTCACCATGAAAGGGGTTGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTCAGTCCATGTATTAGCAGGTTGAAGAATCAGATTAACTTCTCACCAAGAAATTCTTCTTCCCTGGGAATGTTGTCTCAGATCTCTGAAATAGGGAGTGAAGACATTGAGACAACTAGTCCTGATGATAATACCACTCATGGAGGTAATGATACTCAACATTTTGGCCCTGGATTCCCTTATGGTTCTTGGAATGAGACTCTACAACTGTCAGAAAATCTCAGTGGCTTGAAAAGAGGGAGAAGTGACAGTGAAAAGATCTTTTCTGATGTTCAGAATGGAGAACCTGGAAACCAAGTTAATATATTATCACATCACTTGAGTTTACCGAAAACTTCAGCAGAGATGATTACAATGGAGAAGTTGCTTCAGTTTCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGTAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTAGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTGGTGATAAAAGGTCAAACTGCAAGTGTTCAAACATGCAAAAGGCAGATTCATAA 1140 0.4237 MDSHTHHHQDYQLHLHQNQPSSGLLRFRSAPSSLFSNLTPFVSYGADTAASSSFRELEENSNQKCCSKDFSLMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGPYGLVGSMGMDHEAPNKGFGSSLLRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNGELSPCISRLKNQINFSPRNSSSLGMLSQISEIGSEDIETTSPDDNTTHGGNDTQHFGPGFPYGSWNETLQLSENLSGLKRGRSDSEKIFSDVQNGEPGNQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLGDKRSNCKCSNMQKADS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02504 379 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Vian3g02504 379 FunFam Transcription factor bHLH130 family 306 375 - -
Vian3g02504 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 368 IPR036638 GO:0046983
Vian3g02504 379 CDD bHLH_AtbHLH_like 310 362 IPR045239 -
Vian3g02504 379 Gene3D - 306 377 IPR036638 GO:0046983
Vian3g02504 379 MobiDBLite consensus disorder prediction 81 101 - -
Vian3g02504 379 MobiDBLite consensus disorder prediction 1 22 - -
Vian3g02504 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Vian3g02504 379 SMART finulus 311 361 IPR011598 GO:0046983
Vian3g02504 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02504 Vian-Chr3 38997240 38999873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02504 14 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.296 4.96e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g02504 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02504 - - gmx:100819605 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02504 3 38997240 38999873 Vian3g02504 3 38997240 38999873 ECH
Vian3g02504 3 38997240 38999873 Vian3g00021 3 171042 173069 ECH
Vian2g01983 2 39448992 39451467 Vian3g02504 3 38997240 38999873 PCT