Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02501 ATGGAACAAACCATGCTTGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCATCATAGCTCCGGCGCCGGAAACCGCCAGTTCCTTCACTGCGCTGCTCGAACTCCCGCCGACGCAGGCCGTCGAGCTCCTCCATTCGCCGGAGCGAGCCGGGAAACCACCGCGCCATAATCCAAAACCCTATCCGTTGACGTCATTTGCCTCCGCCTCCGCTTCGTCTGCCAACCTGACCTTCCCGTCAAACGCCGCCCTGATTGAACGCGCCGCCAGGCTCTCCGTCTTCGCCGGAGAGAATTCTAACTCGAACTCGAACTCAACGGAGATAAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGTTCAACTCAGGGCGGCGGCTCCGCCTCCGATCCCGCCCTGGAGAACAAGGACGAGAAGGGCCTGAAGAGGAAGGAGCGAGAGAAGAAGGTGAAGGCATCTTCGAAGAAGAGCAAGAGTGTCGTCCCAGACGATAGTTCCTGCGACGGCCAGAAGCTTCCGTACGTTCACGTCCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTGCAAGAGCTGGTCCCGGGTTGCAATAAGATATCAGGCACAGCATTGGTTCTGGATAAAATCATCAACCATGTTCAATCTCTACAACATGAAGTGGAGATATTATCGATGAAACTGGCAGCAGTGAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTCTCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCACCCGTCGTCTGGCCAGAAATCCCGCAGAATGCAAACAGACAACAATATCAGCAACCGTGGCAATTCGATGCATTCCACCACCAGCCCATTTGGGGCAGGGAAGAAGACAACACTAATTTTATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCTAATTCAGGCGCAAATGAGTTGGGAAACCATACAAGGGACAATTAA 1035 0.5246 MEQTMLEAIQFNEEIQGIIAPAPETASSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSFASASASSANLTFPSNAALIERAARLSVFAGENSNSNSNSTEIKRELPETDSNPSSTQGGGSASDPALENKDEKGLKRKEREKKVKASSKKSKSVVPDDSSCDGQKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSPMDCNFPPTVAPVVWPEIPQNANRQQYQQPWQFDAFHHQPIWGREEDNTNFMTPENSLLSYDSSANSGANELGNHTRDN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02501 344 MobiDBLite consensus disorder prediction 132 162 - -
Vian3g02501 344 FunFam transcription factor bHLH48-like isoform X1 180 252 - -
Vian3g02501 344 SMART finulus 189 239 IPR011598 GO:0046983
Vian3g02501 344 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 79 328 IPR024097 GO:0006355
Vian3g02501 344 MobiDBLite consensus disorder prediction 311 344 - -
Vian3g02501 344 CDD bHLH_AtBPE_like 173 258 - -
Vian3g02501 344 MobiDBLite consensus disorder prediction 43 64 - -
Vian3g02501 344 MobiDBLite consensus disorder prediction 96 167 - -
Vian3g02501 344 MobiDBLite consensus disorder prediction 314 338 - -
Vian3g02501 344 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Vian3g02501 344 MobiDBLite consensus disorder prediction 115 129 - -
Vian3g02501 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
Vian3g02501 344 Gene3D - 180 251 IPR036638 GO:0046983
Vian3g02501 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 252 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02501 Vian-Chr3 38926200 38932459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02501 6 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.000 2.66e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g02501 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02501 - - gmx:100799133 494.967