Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02497 ATGGTTGTGCTTTGTTCCAAGGGCACACCGAATTTGGAGAAAGTCGGGAGTTGTTGTCATAAAACAATGGAGTCTCACGATGAAACAGGATGCCAGGCTCGAGAAAGGCCAATTCTTTGCATTAACAATTGTGGCTTCTTTGGAAGGGCTTCCACCATGAATATGTGCTCCAAATGTTACAAAGACATGCTCTTGAAGCAGGAACAAGACAAACTTGCAGCAGCGTCGGTTGAGAACATTGTGAATGGCGGCTCTGGCTGCAGCGGGAAGCAGGCGGTAACTGCAGGTTCTGTGGATGTTCAAGTTGGAAATGTGGAGATGAAGACAGTCTCTGCTGATATTTCTGGAGATTCATCCTCCGGTCAGAATTTGGAGATGAAAGCTAAGACAGGTCCCAGCAGATGCGCCACTTGCCGGAAGCGTGTTGGATTAACCGGTTTCAGCTGCAAATGTGGGAATCTCTTTTGTGCAATGCACCGCTATTCTGACAAACACGATTGCCCCTTTGATTATCAGACTGTTGGTCGTGAGGCTATAGCTAAAGCCAACCCTGCAATTAAGGCTGATAAGCTTGATAAAATCTAG 585 0.4667 MVVLCSKGTPNLEKVGSCCHKTMESHDETGCQARERPILCINNCGFFGRASTMNMCSKCYKDMLLKQEQDKLAAASVENIVNGGSGCSGKQAVTAGSVDVQVGNVEMKTVSADISGDSSSGQNLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYQTVGREAIAKANPAIKADKLDKI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02497 194 Gene3D - 22 82 - -
Vian3g02497 194 ProSiteProfiles Zinc finger A20-type profile. 34 68 IPR002653 GO:0003677|GO:0008270
Vian3g02497 194 PANTHER AN1-TYPE ZINC FINGER PROTEIN 35 194 - -
Vian3g02497 194 SMART AN1_Zf_4 135 172 IPR000058 GO:0008270
Vian3g02497 194 ProSiteProfiles Zinc finger AN1-type profile. 129 175 IPR000058 GO:0008270
Vian3g02497 194 SMART A20_3 37 61 IPR002653 GO:0003677|GO:0008270
Vian3g02497 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 39 75 - -
Vian3g02497 194 FunFam Zinc finger AN1-type containing 6 109 190 - -
Vian3g02497 194 Pfam A20-like zinc finger 38 61 IPR002653 GO:0003677|GO:0008270
Vian3g02497 194 Gene3D - 110 190 IPR035896 -
Vian3g02497 194 Pfam AN1-like Zinc finger 135 172 IPR000058 GO:0008270
Vian3g02497 194 SUPERFAMILY AN1-like Zinc finger 126 189 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02497 Vian-Chr3 38877854 38878701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02497 27 194 C2H2 Transcription Factor Family AT3G52800 41.618 4.06e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02497 - - gmx:100499995 300.827