LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g02496	ATGGAACCCTCAAAGCCACGTTACCCTAAACGTGGAAGAAGTTCTCGAGGCTTGTGGAATAGTTCTTCTGTAACCCTAAATTTCACAAAAAATGAAGTTCTGATTCCAGTTCAAGGATCCCAATTTCCTTCAAACTTAATAGCAATGGAACATGCATCACAACAAACCAGCGTGGTTGCCTCACAAACAATTGAGTTCGGAGTTCAAGAACAAGTTAAGCAAAAACGATATCGTAAACGGAATTTCAAGAAAACAACCTCAATGTATCGAGGAGTGACAAGGTGTAAGGGACGTTTTGAATCTTTTGTGTGGGATAAGGACCTCAAAACAACTGGGAAGAGAGGAAAAACAGGTGGATTTAAGGATGAACTTGAAGCAGCAAGAGCTCACGATTTGATTGCCATTAAGATATGGGGCAAGGTTAGCAAGGATACTTCTGCTACTGATGGTAGTAATTCCTCCAGTGGTGTAGATGGAGCTTCAGCTGAAGTGCAGGAAAACAATGTAGATGGTGATGCATTGTCAAACCCTGAATCCACCACAATGCAATCAGTGTTTGATGAGATTGGTCAACAATCTCAAGCAGTAACAACTTCACAAGACCAACATGAGAATGTTGCAGAGAACAACCTTTTGTATGCTGATCAGTTTGCATGGTTAGATTTTGACCTAAGTTCGTCTCTTTGGTCATATGATTTTGACAGTGCACAAGTTCAGGACCATGCAGATGCTTTAGGCAATAATGCCCTAAATTGGGAGTCCTCAACAGTAGGAGCAGGAAATGGAAGTGTTGCTTCATCTGGGTCAATGGAGCCTAATATTCTGCAATTTGATGAACAAAACCCTCATGCTGCATCTGTTCATAGGTATGAGCCTCTCCAATATGGATTTGCCACAAGCAACCAGAATGAGAATGTGCTTCCTGACAACGATTGGGATATAACCCAATATCTGAATCTCGATTACTCTGACATGGTTGATCACGAAACTACTGATGATTGA	1002	0.4132	MEPSKPRYPKRGRSSRGLWNSSSVTLNFTKNEVLIPVQGSQFPSNLIAMEHASQQTSVVASQTIEFGVQEQVKQKRYRKRNFKKTTSMYRGVTRCKGRFESFVWDKDLKTTGKRGKTGGFKDELEAARAHDLIAIKIWGKVSKDTSATDGSNSSSGVDGASAEVQENNVDGDALSNPESTTMQSVFDEIGQQSQAVTTSQDQHENVAENNLLYADQFAWLDFDLSSSLWSYDFDSAQVQDHADALGNNALNWESSTVGAGNGSVASSGSMEPNILQFDEQNPHAASVHRYEPLQYGFATSNQNENVLPDNDWDITQYLNLDYSDMVDHETTDD	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g02496	333	ProSiteProfiles	AP2/ERF domain profile.	88	148	IPR001471	GO:0003700\|GO:0006355
	Vian3g02496	333	SUPERFAMILY	DNA-binding domain	87	141	IPR016177	GO:0003677
	Vian3g02496	333	Gene3D	AP2/ERF domain	88	145	IPR036955	GO:0003700\|GO:0006355
	Vian3g02496	333	MobiDBLite	consensus disorder prediction	143	162	-	-
	Vian3g02496	333	SMART	rav1_2	88	154	IPR001471	GO:0003700\|GO:0006355
	Vian3g02496	333	MobiDBLite	consensus disorder prediction	144	162	-	-
	Vian3g02496	333	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	61	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g02496	Vian-Chr3	38860029	38863254	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g02496	51	142	AP2-EREBP Transcription Factor Family	AT5G57390	36.364	3.67e-12	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g02496	K09285		-	gmx:102665149	245.358