Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02493 ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGGGCACTTGGTGCAACTTTTCTTGTTCTCCACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCTCTTGTCCAAACAAGCTGACAAATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATTACATATGCATTATAACCGGCTATTGCGAAGGGGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAATGGTTGACTCAGTTGCTACTAGCTGTGGACTACCTTCACTCCAATCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATCCTGAAGACCTCACTTCTCCGGCTTTTGGAACCCTTAACTACATGTGTCCCGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGTATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCGTTGCCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACACAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCTTCATCTATTTATTTGCCAGTACATCTTATAAATAGTAACTCTCCAAAGGATAAAACTAAAAACAAATCTAGTGGTAGCAAAGACCATTGGGATAAGGAAGCAGAATTAGCAGGATTAGTAAATCGGTTGGACCGAATTTATCCATTGGAGGGAAATGGAGATGTACAGACACGGAACCCGCATAATGAGGACAAGCTAGCAATGCCAACCAAAGACAAGGTTGAGACCAAAATGGTTGATTCTACCAGCTATACTCAGGAATTTTCTACGAGTGTTAGTGGCTCAAAAGATGGCTCTACAACATCTGAATCAACTGTTTGCAGTGTGAGCAAGGAAGGAGACTTTAAAAATAGATTTGCAAGGGACCCAGCTGACAGTGAGATCACTTCAAAAAGTACAATAGATTGTGTGCATGAAGAACAAGGACTTACTACCCATAAGTCATACGCATTTGACATAAATACAGAAATTAAAAATGTTGAAGATATTCTTTCCAATGAAGATCTCATTACAGATGAAGCACTCAGCGAAGGTGCCAAAACTGGGGATTACAGTAAATCCACAATATCCAGTGAAGGCAGCGAGGGCAATGATAAAGATGAGTCCATTGATGAGATCATGTCAAAGAGTACCCTTGATTCTGTGCATGAAGAACAAGGACTTACGGTGGATCATTTTCGGAAGTCGGATGTGGTTGACCCAAGCACAGTATCTACAGAAGTTGAAGATAATTTTTCCAGTGAAGGTTTTGATAAAATGGAAACAGAGAGGGAAAATGACAAACTTGAGGACTCCAAAAAATCAACAGTGTTCACTGAAAACAGCGAAGGCAATGATAAAGATGTGTCCATTGAAGAGATAACTTCAAAGAGTATTCTAGAATCTGTGCATGATGAACAAGAATTTACTGCTGAACATTTTCCAAAGTCAGATGTGATTGACACGAATGCAGTGGCTACAAAATTTGAAGATAATTTTTGCAATGAAGCATTTTGTGAAACTGGAACAGAGACGAAAAGTGGTAGACAGGACTCCAGAATATTAGGGTACATTGATGACATCAGATTGAAGAGTACACTCGATTCTATGCATGAAGAGAAATGGTTTATAGCTGAACCTGCTCAAAAGTTAGATCTTGTTGACATAAAAGCCACAGCTTCAATACATGTGGACAGAGTTTCTAATGAAGGTTCTGGTGAAGCTGAAGCACAGAGTGAAGATGCCAAACTTGAGTGCTCCAGTAAATCAATAATTTCCTACGATAACAGCAACGATAATGATGAAGATGGATCTGGTGGTGAGATCACTTCAAAGAGTATGCTAGAATCTGTAGGTGAAGAACAAGGACTCACTGCTGAGCATTTCCAGACGTCTGATGCAATAGACATAACTACAGTGACTACAGAATTTGAAGATAAACTTTCCAATGAAGGTTTTGATAGAGCTGAAACACAGGAGAAAGAAGCTAAACCTGAGGGCTCCATTAAATCTTTGTTCAGTGAAGAAGGCAGCAGCAGTGATAAAGACGGGTCCATTGATGAGGAAAGGTCATCATCCCCACTGGCACAACCTTTTAGGGTTGAACATGACACTGAAACTGGAAGCAGCTTGAAGGAAGATGAAAAACCTGAAGGATTTAAAGAGGGCTCACACACGAACAGCTTGACTTCTGATACTAAGGATACGCATCCAGGTAAGGATGAAAACAGAGAAGACACCCACACAATCAGTTGCTCAACGTGTAAAGAAGACAGCAAGGCTGTTGTGACCCAGAAGCCAGCAAATGACATTTCATTAATGAAGCGTCTTTCAAGAGGCAGTAATGCTTCTTGCCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTATGTGCACAGCTACTTCAGCAAGGAAACTTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTGTCTTCCAGAGAAACAGCGATATTGCTAACAAAAAGCCTCATGGCCTCCCAAAAACTTAATCCTGAAACGTAG 2847 0.4074 MESSGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKILLSKQADKSKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNPEDLTSPAFGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIYLPVHLINSNSPKDKTKNKSSGSKDHWDKEAELAGLVNRLDRIYPLEGNGDVQTRNPHNEDKLAMPTKDKVETKMVDSTSYTQEFSTSVSGSKDGSTTSESTVCSVSKEGDFKNRFARDPADSEITSKSTIDCVHEEQGLTTHKSYAFDINTEIKNVEDILSNEDLITDEALSEGAKTGDYSKSTISSEGSEGNDKDESIDEIMSKSTLDSVHEEQGLTVDHFRKSDVVDPSTVSTEVEDNFSSEGFDKMETERENDKLEDSKKSTVFTENSEGNDKDVSIEEITSKSILESVHDEQEFTAEHFPKSDVIDTNAVATKFEDNFCNEAFCETGTETKSGRQDSRILGYIDDIRLKSTLDSMHEEKWFIAEPAQKLDLVDIKATASIHVDRVSNEGSGEAEAQSEDAKLECSSKSIISYDNSNDNDEDGSGGEITSKSMLESVGEEQGLTAEHFQTSDAIDITTVTTEFEDKLSNEGFDRAETQEKEAKPEGSIKSLFSEEGSSSDKDGSIDEERSSSPLAQPFRVEHDTETGSSLKEDEKPEGFKEGSHTNSLTSDTKDTHPGKDENREDTHTISCSTCKEDSKAVVTQKPANDISLMKRLSRGSNASCQQRADALESLLELCAQLLQQGNFEELAAVLRPFGEDAVSVSSRETAILLTKSLMASQKLNPET 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02493 948 MobiDBLite consensus disorder prediction 834 848 - -
Vian3g02493 948 CDD STKc_Nek 9 264 - -
Vian3g02493 948 MobiDBLite consensus disorder prediction 805 822 - -
Vian3g02493 948 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02493 948 MobiDBLite consensus disorder prediction 749 769 - -
Vian3g02493 948 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 897 - -
Vian3g02493 948 MobiDBLite consensus disorder prediction 452 477 - -
Vian3g02493 948 SUPERFAMILY Protein kinase-like (PK-like) 7 285 IPR011009 -
Vian3g02493 948 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02493 948 Gene3D Transferase(Phosphotransferase) domain 1 92 313 - -
Vian3g02493 948 MobiDBLite consensus disorder prediction 506 553 - -
Vian3g02493 948 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02493 948 MobiDBLite consensus disorder prediction 749 848 - -
Vian3g02493 948 MobiDBLite consensus disorder prediction 519 553 - -
Vian3g02493 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Vian3g02493 948 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02493 Vian-Chr3 38820101 38827709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02493 14 293 MAP Kinase Kinase Kinase AT1G09000 29.097 3.00e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vian3g02493 Pkinase 9.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02493 K08857 - gmx:100818558 1219.91