Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02490 ATGGCAGACCCTTACTCCAATTTCTTCTCACCACCTTTCTTCCACTACCCTTCTCCAAACCCTTCCACCCACCACCATCATCCATATCCTCACAACTTCATCAACCAAACCACCACCACCAACATCACCCACAACACCTTTTTCCACTTCCAACATCACCACCACTTTCAAACCACTACCACCACCTCTTTTTCTTCTTCTTCACCCCCTTCTCCTCCCTTGAGAGAGGCCCTTCCTCTTCTCACCCTCAGCCCAAAAAATTATGACCAACGGGAGGAGCACTACCAGGATCAGGATCAGGATCAGGATCAGCTTTGCACTGCCATGGATGTCGAAGACAACTTCAACAGGACCCTCCATAACCCCAAAGAAGAGGACCAAGAAGATGATGCTCATCACAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGCGCTGCTGAGATTGCTTCTGTGCTGTCTTCGGCTTGTGCCACAGACAAAGACCAACAACAAGGAGGAGGAGGAGATTGTGATAATAATGGGATTGATGATTCTTCTTCAGGGTTCTTGTCGAACAGGCTCAACAAGGGACAGTACTGGATTCCTACCCCTTCTCAGATTCTCATTGGACCTACACAGTTCTCTTGTCCTGTTTGTTACAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTTAAAGATTTCAGAACTCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGCGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTACTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGCTTTGAAGAAGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA 1107 0.4697 MADPYSNFFSPPFFHYPSPNPSTHHHHPYPHNFINQTTTTNITHNTFFHFQHHHHFQTTTTTSFSSSSPPSPPLREALPLLTLSPKNYDQREEHYQDQDQDQDQLCTAMDVEDNFNRTLHNPKEEDQEDDAHHSVTVALHIGLPSPSAAEIASVLSSACATDKDQQQGGGGDCDNNGIDDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02490 368 FunFam Zinc finger protein WIP2 263 345 - -
Vian3g02490 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 314 IPR013087 -
Vian3g02490 368 PANTHER ZINC FINGER PROTEIN WIP2 39 366 IPR043584 GO:0003700|GO:0010468
Vian3g02490 368 SUPERFAMILY beta-beta-alpha zinc fingers 206 232 IPR036236 -
Vian3g02490 368 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Vian3g02490 368 FunFam zinc finger protein WIP2-like 209 232 - -
Vian3g02490 368 Gene3D Classic Zinc Finger 209 232 - -
Vian3g02490 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
Vian3g02490 368 Gene3D Classic Zinc Finger 272 347 - -
Vian3g02490 368 SUPERFAMILY beta-beta-alpha zinc fingers 276 314 IPR036236 -
Vian3g02490 368 SMART c2h2final6 210 232 IPR013087 -
Vian3g02490 368 SMART c2h2final6 294 314 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02490 Vian-Chr3 38776373 38778464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02490 1 368 C2H2 Transcription Factor Family AT3G57670 61.616 9.62e-147 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g02490 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02490 - - gmx:100776343 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02490 3 38776373 38778464 Vian3g02490 3 38776373 38778464 ECH
Vian3g02490 3 38776373 38778464 Vian11g00341 11 3214370 3216386 ECH
Vian2g01969 2 39237917 39240257 Vian3g02490 3 38776373 38778464 PCT