Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02485 ATGGATGGTGGCGATGACCCTTCAGCATTGTCATGGCTCTGGGTCATTGAAGCCCTAGCAGCCCGTAAAGAAATCTCGAATCCCACTTTGCTGAGTTTGATTGATGCAGCACCTGTGGGGAAGGATAAATTTGGTGAAAATGTAAAAGAAATGGTTTCTTTGAGGTGCTTGGAGAAACTGTCCACTATTATGTTTGACGGTGTAGCTTCTTCATCATCGGATTCCAGAGCTGGATTTGATTTTTCGCGGAGTTGTCAAGATGTCCTCCAGGAAATATTGGATGAGATCCCATTATCAAATCTGAAAATGAATGGAGCGCAGCTTTTGAAATCAGATCTTTACCCGTTTATAAATCACAAAAGAGCTGTCACTTCTACATGCCACTTAGAGCAGCTGAGACAAACAATCTTGGAAGGTACTCATCCTCATACTGATTACTTGAAAGAAAGGAGTGGATTATTTCCTCAGAATAACAGTTATTCGGTGATTGTAAATGATGTCAATCGTGACGATCATTCTGCTAAGGAAGCTGGGAACTCCGCCAATACAGAAAACGTGCTAGGAAAAGATAACTCAGTGTCCTTGACTTTAGAGAATGGGAATAAATCTTCAAGAGAACACTTGCTTGATAATAATTCTTCTCCCTCTAAGAGGAGTAGGGTTTACTCAGTTGATGATTATCTTACAAAACACTTTCATGGAAAGCAAGTCTGTGTGAAGGAATGTGGTGATTTCTTAAGAACTTCAAAGAGGGTTAAACTTTCTGCATCTACAAGTTTTGAGCCTAGGAAAGAGAAGCCAGATTCTGAACAAGGAGATCATCATGTAGAAAATAATAACAAGGAAACTGTGGGTGGTGGGTTCTCAGAGGATATTCCCTATAGATGCATTGTTTCAAAATTGTGCCAACCCAGCAGCCATATTGAAGTCCCCCCTGATGAATCAAATATTCCTTTTAATGATGCTTTGATGCTTCAACATACATTTGGTGGTGAAAATTCTCAACAACAGCTGGTTAAGTCAATTCCACATGAAGCACTTGCAGATGGAATCCAACATGGGATTTCAGGAGGTAAACCCAAGTCTAAACATGAAAAAGATTTACAACTTGAAGATCCAAATGACTCACCGCATCAAATTGCTGGTGTTAAAGCACTTGATCATACTGGGAATGGTTGTAGGGTAGAGGAATCAGGTGATATTGGGTATCAAAGTGAAACAAATAGCCTTAAAATGAAGAAGCAGACAGTACAAAATCTTTGTTTAAAGTGTAATGAAGGTGACCAATTACCAATTAGTGATGTAAATGTCGTCCAACCAGTGGTTACTGAATGTTGTCTTGGTATGGAAACTACCATGCCAACAAATGATGCTAATGCAGAAAAAAATCATCAAACAATTAATCTACACCAACCCAAACAGACAGAACCAGATATCGCAGCGTTAAATCTCTCCCAAGAGTCGGTTGCTTGTGATGAAACTATAGTTGGTGTGGTTAATGGTTGTGGAGCAGAGGTGGTTACTGAATGTTGTCTTGGTATGGCAACTACCATGCCAACAAATGATGCTAATGCAGAAAAAAATCAGCAAACAATTAATCTACACCAACCCAAACAGACAGAACCAGATATTGAAGCGTTAAATCTCTCCCAAGAGCCAGTTGCTTGTGATGAAACTATAGTTGGTGTGGTTAATGGTTGTGGAGCAGAGTTATCAAGTGATAGTGATGAGTATCACAACGAAAAAAAATGTCTTGAAGCAAAAAAGCATGAATTCCTGCACTCCCACTGCACTGTTGATCAAGATTTCTCAGCAATGAATGAACCAAATGTAAAAAATCTTTGCATGAAGTGTAATCAAGGTGGCCAATTATTGGCTTGTAAAACAACTACTTGCCCAATGATGGTGCATGAAAACTGTCTAGGGGCCTCTGCACAATGCATTACAAAGGGCGACTTTTTTTGCCCATTTTGCACATATTCTCGCACTATTTCAGAATATATTGAAGCTAAGAAAGAAGCTTCCTTAGCAAGGAAGGAATTAGCCATCTTTATTAGTAAAGGTAAAATGAGTCGAGCTGCCGAGAGTCTTCTTTATGAATTTCGTACACAAGAACATGTTTTTTCAAGAAAGAGTAGTGAGTATGAACATATTCATGTCAAAAACAAAAGAGATGAACAGTTAACAAGGTGTGGAGACAATAGAGAAGATCATGTTGATGAGCATGCAAATGAAGCCAATAATCTTCAGTTTGGAAGAAGTCAGCAACAAGCCCATATATCGTGTACCTATTCGTCATTCAGAGAAAAGGAAAATATAAGCAATGGATCAGTTGAATTTTTAAGAGAAGAGAAAATAGGTCAAATGCCAAATGCAAAGAACATAACTGGTGTAAGAGGTGAAGAAAATAAATTGCCAACTGACCATGTAGATGGACTTGTTGGTGACACATGTACTGTTGAAAAAGAAGCCCTTGTTAATAAAAGCAATGCTGGATATGAAAGTCCACAAGAAACGGCAAAACATCTAGATACTGATGGAGCAACAGAGTCAGTTTCTGAACATAATACTGGAAAAGAGGAAATGTCTGAAAATGAATGTGAAAAGCATAGTATTTCTAGATACTCCATGAGATACCGTAAACATAAAATGCAATGCAAACCTGAGGCAAGCCCATCATTTCTCGATAATCAATTAAGACGAAAATATATTCCATGGACAGCTGAAGAGGAAGAGATGATAAGGGAAGGAGTACAGACGTTTGGTTTCAATGACCCAAAGAAATGGAAAAACATTTTGGCATTTGGTTCTCATGTGTTTGAGAAAGTTGGTAAGCGCCGTACACCACAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTTCCCCAAAATCAAAATGA 2904 0.3864 MDGGDDPSALSWLWVIEALAARKEISNPTLLSLIDAAPVGKDKFGENVKEMVSLRCLEKLSTIMFDGVASSSSDSRAGFDFSRSCQDVLQEILDEIPLSNLKMNGAQLLKSDLYPFINHKRAVTSTCHLEQLRQTILEGTHPHTDYLKERSGLFPQNNSYSVIVNDVNRDDHSAKEAGNSANTENVLGKDNSVSLTLENGNKSSREHLLDNNSSPSKRSRVYSVDDYLTKHFHGKQVCVKECGDFLRTSKRVKLSASTSFEPRKEKPDSEQGDHHVENNNKETVGGGFSEDIPYRCIVSKLCQPSSHIEVPPDESNIPFNDALMLQHTFGGENSQQQLVKSIPHEALADGIQHGISGGKPKSKHEKDLQLEDPNDSPHQIAGVKALDHTGNGCRVEESGDIGYQSETNSLKMKKQTVQNLCLKCNEGDQLPISDVNVVQPVVTECCLGMETTMPTNDANAEKNHQTINLHQPKQTEPDIAALNLSQESVACDETIVGVVNGCGAEVVTECCLGMATTMPTNDANAEKNQQTINLHQPKQTEPDIEALNLSQEPVACDETIVGVVNGCGAELSSDSDEYHNEKKCLEAKKHEFLHSHCTVDQDFSAMNEPNVKNLCMKCNQGGQLLACKTTTCPMMVHENCLGASAQCITKGDFFCPFCTYSRTISEYIEAKKEASLARKELAIFISKGKMSRAAESLLYEFRTQEHVFSRKSSEYEHIHVKNKRDEQLTRCGDNREDHVDEHANEANNLQFGRSQQQAHISCTYSSFREKENISNGSVEFLREEKIGQMPNAKNITGVRGEENKLPTDHVDGLVGDTCTVEKEALVNKSNAGYESPQETAKHLDTDGATESVSEHNTGKEEMSENECEKHSISRYSMRYRKHKMQCKPEASPSFLDNQLRRKYIPWTAEEEEMIREGVQTFGFNDPKKWKNILAFGSHVFEKVGKRRTPQDLKDKWKNMCKASPKSK 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02485 967 MobiDBLite consensus disorder prediction 946 967 - -
Vian3g02485 967 MobiDBLite consensus disorder prediction 257 280 - -
Vian3g02485 967 MobiDBLite consensus disorder prediction 178 192 - -
Vian3g02485 967 MobiDBLite consensus disorder prediction 830 869 - -
Vian3g02485 967 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 515 962 - -
Vian3g02485 967 MobiDBLite consensus disorder prediction 198 219 - -
Vian3g02485 967 MobiDBLite consensus disorder prediction 839 869 - -
Vian3g02485 967 ProSitePatterns Zinc finger PHD-type signature. 615 658 IPR019786 -
Vian3g02485 967 Gene3D - 896 963 - -
Vian3g02485 967 SMART PHD_3 614 659 IPR001965 -
Vian3g02485 967 MobiDBLite consensus disorder prediction 173 192 - -
Vian3g02485 967 ProSiteProfiles Myb-like domain profile. 905 960 IPR001005 -
Vian3g02485 967 MobiDBLite consensus disorder prediction 358 373 - -
Vian3g02485 967 MobiDBLite consensus disorder prediction 351 374 - -
Vian3g02485 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 695 IPR013083 -
Vian3g02485 967 CDD SANT_TRF 904 961 - -
Vian3g02485 967 ProSiteProfiles Zinc finger PHD-type profile. 612 661 IPR019787 -
Vian3g02485 967 MobiDBLite consensus disorder prediction 946 961 - -
Vian3g02485 967 SMART sant 902 962 IPR001005 -
Vian3g02485 967 Pfam Myb-like DNA-binding domain 906 966 - -
Vian3g02485 967 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 905 964 IPR017930 -
Vian3g02485 967 MobiDBLite consensus disorder prediction 256 285 - -
Vian3g02485 967 SUPERFAMILY Homeodomain-like 900 961 IPR009057 -
Vian3g02485 967 SUPERFAMILY FYVE/PHD zinc finger 612 663 IPR011011 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian3g02485 Myb_DNA-bind_6 4.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02485 - - var:108326175 1979.91