Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02469 ATGGCTGCACTTACTAATATCCACACCTCCTTCTTCCCCACCAACACCATTCTTCCAAAGCCATCGTCTTTTCAACCCTTCTTCTCTACCCGACTTCTTGGCCTACCCTTATCTTCTTCTTTTTCCGTCTCCAAAAGATTATCTTCCTTCACTTCCAGGCCCATCAAATGTTCTGTTTCCGAAGCCACAGAGCCCAAAGCTGGTGAGAAGAAGCAATTGTTGAGAAGAGGGGACGTGAGAAACATAGCGATTGTTGCTCATGTTGATCATGGAAAGACAACACTCGTTGATGCCATGCTCAAACAAACTAAGGTATTTCGTGATAATCAATTTGTGCAGGAAAGGATAATGGACTCGAATGATTTGGAGCGCGAAAGAGGGATCACAATACTGAGTAAAAATACATCTGTCACTTATAAAGACTCAAAGATCAATATAATAGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGTATCTTAAATATGGTGGAAGGGATCCTTCTAGTGGTAGATTCTGTTGAAGGACCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTGGAGTTTGGTCATTCAGTTGTTGTGGTTGTGAATAAAATAGATAGACCTTCTGCTCGCCCAGATTTTGTTGTCAATTCTACTTTTGAACTCTTCATTGAACTGAATGCCACAGACGAACAGTGTGACTTTCAAGTAATCTATGCAAGTGGTATAAAAGGGCAAGCAGGTTTGTCTCCTGAAAATCTGGCAGAAGACCTTGGTCCATTGTTTGAATCCATAATTAGATGCATCCCTGGACCGCGCATTGACAAAGATGGTGCTCTTCAAATGCTGGTGACAAATATTGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGTGTGCAAGCTGGCGTTTTGCAAAAAGGAATGGATGTTCGAGTATGTACTTCAGAAGATTCGTGTAGATTTGGAAGAATTAGTGAGCTCTACGTATATGACAAATTCAGTAGGGTTCCTGCAGATAATGTGGAGGCAGGTGATATATGTGCAGTGTGTGGAATTACTGACATTCAGATTGGGGAGACAATTGCTGATAAAGTATATGGGAAGCCACTACCTTCCATCAAGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAACTTAAGGGATAGGCTTTATCGTGAACTTGAGCGGAATCTGGCTATGAAAGTTGAAGATGGTGAAACAGCTGATACATTTGTTGTCAGTGGGCGTGGAACTTTACATATCACTATACTCATAGAAAATATGCGAAGAGAAGGCTATGAATTCATGGTTGGACCTCCCAAAGTTATCAACAAGAAGCTGAATGAAAAATTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGACAGATGTTTGACATGCAAGGAGTCGGATCGGAAGGAACTACACTACTCAAATATAAGATCCCAACACGTGGTCTTCTTGGATTGCGGAATTCAATTTTAACCGCATCACGAGGAACGGCTATTCTCAACACCGTCTTCGATAGCTATGGACCTTGGGCCGGTGAAATCAGTACCCGCGATCAAGGCTCATTGGTTGCTTTTGAGGATGGAGCAAGTACTTCTTATGCAATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGACCTGGTGTGGAAGTTTATAGAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGTCCTTGAATGTCTGTAAGAAGAAAGCTGCTACCAACATTCGTTCCAATAAGGAACAAACAGTGATTCTTGATACACCATTAGACTATAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTTGTAGAGGTCACCCCAACAAGTATCCGAATGTGCAAGAATCCAAAATTAGCAAAGAAACAAAGGTAG 2016 0.4236 MAALTNIHTSFFPTNTILPKPSSFQPFFSTRLLGLPLSSSFSVSKRLSSFTSRPIKCSVSEATEPKAGEKKQLLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDSKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLQKGMDVRVCTSEDSCRFGRISELYVYDKFSRVPADNVEAGDICAVCGITDIQIGETIADKVYGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKLNEKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTVFDSYGPWAGEISTRDQGSLVAFEDGASTSYAISSSQERGQMFIGPGVEVYRGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPTSIRMCKNPKLAKKQR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02469 671 Pfam Elongation factor Tu domain 2 293 362 IPR004161 GO:0005525
Vian3g02469 671 Gene3D - 77 272 IPR027417 -
Vian3g02469 671 Gene3D Elongation Factor G (Translational Gtpase), domain 3 380 663 - -
Vian3g02469 671 NCBIfam translational GTPase TypA/BipA 79 669 IPR006298 GO:0003924|GO:0005525
Vian3g02469 671 SMART EFG_C_a 469 558 IPR000640 -
Vian3g02469 671 FunFam GTP-binding protein TypA 380 485 - -
Vian3g02469 671 FunFam GTP-binding protein TypA 463 556 - -
Vian3g02469 671 FunFam GTP-binding protein TypA 557 643 - -
Vian3g02469 671 Gene3D - 463 556 - -
Vian3g02469 671 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 118 133 IPR031157 -
Vian3g02469 671 CDD BipA_TypA_C 472 551 IPR035651 -
Vian3g02469 671 SUPERFAMILY Translation proteins 225 372 IPR009000 -
Vian3g02469 671 PRINTS GTP-binding elongation factor signature 145 155 IPR000795 GO:0003924|GO:0005525
Vian3g02469 671 PRINTS GTP-binding elongation factor signature 197 206 IPR000795 GO:0003924|GO:0005525
Vian3g02469 671 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Vian3g02469 671 PRINTS GTP-binding elongation factor signature 125 133 IPR000795 GO:0003924|GO:0005525
Vian3g02469 671 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 552 664 - -
Vian3g02469 671 Pfam Elongation factor G C-terminus 470 555 IPR000640 -
Vian3g02469 671 CDD BipA_TypA_II 279 372 IPR047042 -
Vian3g02469 671 CDD TypA_BipA 78 271 IPR047041 -
Vian3g02469 671 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 272 IPR000795 GO:0003924|GO:0005525
Vian3g02469 671 Pfam Elongation factor Tu GTP binding domain 79 269 IPR000795 GO:0003924|GO:0005525
Vian3g02469 671 FunFam GTP-binding protein TypA 76 272 - -
Vian3g02469 671 FunFam GTP-binding protein TypA 273 373 - -
Vian3g02469 671 Gene3D Translation factors 273 373 - -
Vian3g02469 671 SUPERFAMILY EF-G C-terminal domain-like 377 461 IPR035647 -
Vian3g02469 671 CDD BipA_III 379 457 IPR047043 -
Vian3g02469 671 Gene3D bipa protein 557 636 IPR042116 -
Vian3g02469 671 NCBIfam small GTP-binding protein domain 80 228 IPR005225 GO:0005525
Vian3g02469 671 SUPERFAMILY EF-G C-terminal domain-like 472 587 IPR035647 -
Vian3g02469 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 279 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02469 Vian-Chr3 38372211 38377915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02469 79 206 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 5.28e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02469 K06207 - gmx:100785222 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02469 3 38372211 38377915 Vian3g02469 3 38372211 38377915 ECH