Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02465 ATGGGAACTCCCGAATTCCCAGATCTGGGAAAGCACTGTTCGGTCTCTGATTGCAAGCAGATCGATTTTTTGCCCTTTACCTGTGATCGCTGCCACCAGAGGAAGTTGCTTCCAGAATTAGGAGTTGCAGTAAAAGTAGTTATAAACTACGGGAAAAGTGGTAAAGATGTTATAGAGCGGGAGACCAAAGAGGTGGGAATGGTTGGCTCCTTATTATTGCAGCTTATGGTGTATTGTTTGGAGCACAGAGGTTATATTAAACATCAGTGTCCAAAAGCAGACAAGCAAGATGTAACTGTAGTTGTATGTCCACTTTGCGCTAAAGGAGTTCGTTTAGTTCCTGATCAAGATGCAAATATAACTTGGGAGAATCATGTCAACACTGACTGTGACCCATCGAACTATGAGAAAGTCACGAAGAAGAAAAAATGCCCTGTCCCAGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGCATGGTAGACCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCAGAAAAATGGAAACAAGTTTTTCATTCAGGAATCTTTTGAATGTGAGTAAAAAACAGGAGTCCAAACCACAGCCAAGTTCATCTGCATCATCTAGATGGTCTACGGGCTTTCTTAATGCAGTTTCTAACATTCGATCATCAGCAGAGGCTGGTGTGTCGAAGTTGAGTGAAGCTAACCAAGGCTGGTGGAAAGCATCAGGTGGGGTGGGAGCTAGCCAGAGTAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCTGTTACTGCTTTGGTGGACCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGACCAAAGGTTGCAATTGATGCTTGCCCTAAGTGTAGCAGAGGATTTCAGGATCCTGTTGCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGCAATTCTAGATCATAA 987 0.4417 MGTPEFPDLGKHCSVSDCKQIDFLPFTCDRCHQRKLLPELGVAVKVVINYGKSGKDVIERETKEVGMVGSLLLQLMVYCLEHRGYIKHQCPKADKQDVTVVVCPLCAKGVRLVPDQDANITWENHVNTDCDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCMVDHCLKHRFGPDHKCPGPRKMETSFSFRNLLNVSKKQESKPQPSSSASSRWSTGFLNAVSNIRSSAEAGVSKLSEANQGWWKASGGVGASQSSGQVEQCPQCGAKFSSVTALVDHVQKVHERSGNRSGPKVAIDACPKCSRGFQDPVALVEHVERDHGGNSRS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02465 328 ProSiteProfiles Zinc finger AN1-type profile. 138 188 IPR000058 GO:0008270
Vian3g02465 328 Gene3D Classic Zinc Finger 240 325 - -
Vian3g02465 328 ProSitePatterns Zinc finger C2H2 type domain signature. 301 322 IPR013087 -
Vian3g02465 328 SUPERFAMILY AN1-like Zinc finger 6 33 IPR035896 -
Vian3g02465 328 SUPERFAMILY AN1-like Zinc finger 136 189 IPR035896 -
Vian3g02465 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 327 IPR013087 -
Vian3g02465 328 Gene3D - 2 34 IPR035896 -
Vian3g02465 328 Gene3D - 129 215 IPR035896 -
Vian3g02465 328 SMART c2h2final6 299 322 IPR013087 -
Vian3g02465 328 SMART c2h2final6 262 285 IPR013087 -
Vian3g02465 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Vian3g02465 328 Pfam AN1-like Zinc finger 144 183 IPR000058 GO:0008270
Vian3g02465 328 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 33 - -
Vian3g02465 328 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Vian3g02465 328 Pfam C2H2-type zinc finger 263 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02465 Vian-Chr3 38319018 38322009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02465 1 328 C2H2 Transcription Factor Family AT2G41835 54.848 4.97e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g02465 zf-AN1 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02465 - - gmx:100786272 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02465 3 38319018 38322009 Vian3g02465 3 38319018 38322009 ECH
Vian2g01947 2 38930519 38932195 Vian3g02465 3 38319018 38322009 PCT