Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02464 ATGATGTTTTCAGTGATGAGAATTCTTTGCTTGTTGCCTTTTCTGCTCACTTTGTGTCTGTCAAAATCTCTGCTCGTGGGTGGTGAGTTGCAGGAACAAACTTTACTACCTTCCATCAACCAAAATCTCAGAGTTCCAGGCTGGAATGCCAGCACCTCAGATTACTGCTCCTGGAAAGGTGTCATCTGTGGCAACCTCTCACTGGTGGAGAAGCTCACTCTCTCTAATCAGAATCTTGGAGGCAATGTAAGTTCAATTTCCAGGCTCAAAGCTTTGAAGTGGCTTGACCTTTCAAACAATAACTTTCAAGGGATGATTCCAGCTGCTTTTGGAAATTTATCCCATCTTGAATATCTTGACTTGTCTTCAAACAAGTTTGAAGGTTCAATTCCACCACAATTGGGAGGTCTCAAAAGCCTCAAATCATTGAACTTTTCCAATAACATGCTGGTGGGAGAGATACCTAAGGAACTTCAAGGCCTTGAGACTTTACAGGATTTTCAAATTTTCAACAATCATCTGAGTGGTTCCATACCCAACTGGGTTGAGCACTGGACCAATCTGAGAGTTTTTGCTGCTTATGAGAATCATTTCAATGGAAGGATTCCAGATGCTCTGGGATTCCTTTCTGAGCTTACAACACTGAACCTGCATTCAAACCACCTTGAAGGTCCTATACCAGGAAGCCTCTTTTCTGCATGGAAGCTAGAAGTTCTGATTCTCAGTCAGAACAACTTGAGTGGTGAAATTCCGGAGGAAATCGGGAACTGTCGAACTCTTGTCAGTGTTCGAATTGGAAACAATAATCTACAAGGTAATATTCCTAAGAGTGTTGGAAACCTTACTAGCCTTGCTTACTTTGAAGCTGATGATAATAATCTTTCTGGTGAGTTAGTATCAGAGTTTTCTCTGTGTTATAATCTCACCTTCTTGAACTTGGCTTCAAATGGATTTACTGGAACAATTTCACCAGAATTTGGAAAGCTTATGAACCTGCAGGTGTTGATGCTTTCTGAAAATCTCCTTCGTGGTGATATTCCAGAATCGATTCTTCAGATCAGAAGTCTTGAGATTCTTGACTTAAGCAATAACAGGTTCAATGGAACAATACCAAACGGAATCTGTGACATCGCTCAGTTGCAGAAGCTGCTGTTGGACAGGAATTTCATAAGAGGAGTGATCCCTCAGGAAATTGGAAGGTGTAGAGAACTTCTTGAATTGAAATTGGGGAGTAACAATCTGACAGGAACTATTCCCTCTCAGATTGGTCACATGCATAACTTGGAGATAGCCTTAAATTTGAGCTACAACCATCTTCAAGGACAATTGCCCCCAGAATTAGGAAGACTAATCAAACTTGGTTCTCTGGATATTTCCAACAATAATCTCACAGGTAATATCCCTGATACATTTATCGGGATGGTGGGCTTGATTGTCATTAACATGTCAAATAATCAGCTCAGTGGTAAATTGCCAAAGTGTGCATCATTCCTGCATAATCCTGCTTCAAGTTATTTGGGCAACAGAGGGCTTTGCGGGGAGCCATTGAACATTACATGTGAAGATATTCCCTATCGTTACATAGCTGTGGAAAACAATAATAAATTTACTTACGAAACCATAATGTATATATTTGGACCGTCTCTTCTGGCTTTTATGTTATTTGCTGCAGTTGTCTTGGTAAACAGAGTGTGTCAGAGGAAAGTAGAAAATGTTCCTGAGATAGAATGTGGTGAAACCATTAAAGAACCATCTATAATATCAGGAAAAGTTTTCGCTGACAATCTAAGAGAAGAAGTAGACCTTGAAGCGGTTGCTAAAGCAACTCTTGAAGAATCTAATAAGCTTAGCAGTGGCACTTTCAGTGCACTTTACAAGGCATTGATGCCCTCTGGGGTAGTCTTACTTGTAAGGAAAATAATCCCTATGGACATGACAATAATGCAGCGCCAGAGCAAGATCATTTCAGAGCTTCACAGGCTTATAAAACTGTCCCATGAACATGTAATGAAACCCGTTGGATATGTGATTTGTAGCGATGCTGCTCTTCTCATATATCAGTACATATCCTGTGGAACATTGGCTCAACTTCTTCATGAACCTGCAATGCAACCTGAATATCAGCTCGATTGGCCTGCTAGGTTCTCTATTGCAATGGGAATAGCAAAAGGTTTGGTTTTCCTTCATCAGAAGGCAATTATCCACCTTGACATTTCTTCTAGCAATATTCTTCTAGATGCAAATTTAGGGCCACTGATTGGGGACATCGAAATATCAAAGTTCTTAGATCAAACTAAAGGAAGTGCTAGTATTGTCCCATATGTTGGTTCTTTTGGTTACGTTCCACCAGAATATGCATACACAATGCGAGTGACAGCAGCTGGAAATATTTATAGCTTTGGTGTGATACTGCTGGAGATGGTAACTTCCAGAGCAGCATTTGATGAGGGTAATGGAGAAGGTGTAGACTTGGTGAAGTGGGTTCGTGAAGCTGGAGCAAGAGGTGAAAGTCCAGAGCAGATAATGGATGCAACGCTTAGCTCAGTGTGCGATGAATGGAGGAAAGAAATGCTTGATACTCTGAAAGTGGCCTTCTTCTGCACTCACATCAGGCCAAAAAACCGACCAAATATCAACAACGTTGTGGGAATGCTTCGAGCAATAAGGAACCAAATTGATTTCTGTGTCGATTGA 2694 0.4087 MMFSVMRILCLLPFLLTLCLSKSLLVGGELQEQTLLPSINQNLRVPGWNASTSDYCSWKGVICGNLSLVEKLTLSNQNLGGNVSSISRLKALKWLDLSNNNFQGMIPAAFGNLSHLEYLDLSSNKFEGSIPPQLGGLKSLKSLNFSNNMLVGEIPKELQGLETLQDFQIFNNHLSGSIPNWVEHWTNLRVFAAYENHFNGRIPDALGFLSELTTLNLHSNHLEGPIPGSLFSAWKLEVLILSQNNLSGEIPEEIGNCRTLVSVRIGNNNLQGNIPKSVGNLTSLAYFEADDNNLSGELVSEFSLCYNLTFLNLASNGFTGTISPEFGKLMNLQVLMLSENLLRGDIPESILQIRSLEILDLSNNRFNGTIPNGICDIAQLQKLLLDRNFIRGVIPQEIGRCRELLELKLGSNNLTGTIPSQIGHMHNLEIALNLSYNHLQGQLPPELGRLIKLGSLDISNNNLTGNIPDTFIGMVGLIVINMSNNQLSGKLPKCASFLHNPASSYLGNRGLCGEPLNITCEDIPYRYIAVENNNKFTYETIMYIFGPSLLAFMLFAAVVLVNRVCQRKVENVPEIECGETIKEPSIISGKVFADNLREEVDLEAVAKATLEESNKLSSGTFSALYKALMPSGVVLLVRKIIPMDMTIMQRQSKIISELHRLIKLSHEHVMKPVGYVICSDAALLIYQYISCGTLAQLLHEPAMQPEYQLDWPARFSIAMGIAKGLVFLHQKAIIHLDISSSNILLDANLGPLIGDIEISKFLDQTKGSASIVPYVGSFGYVPPEYAYTMRVTAAGNIYSFGVILLEMVTSRAAFDEGNGEGVDLVKWVREAGARGESPEQIMDATLSSVCDEWRKEMLDTLKVAFFCTHIRPKNRPNINNVVGMLRAIRNQIDFCVD 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02464 897 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Vian3g02464 897 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
Vian3g02464 897 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672|GO:0006468
Vian3g02464 897 Gene3D Ribonuclease Inhibitor 233 523 IPR032675 -
Vian3g02464 897 Gene3D Ribonuclease Inhibitor 62 232 IPR032675 -
Vian3g02464 897 ProSiteProfiles Protein kinase domain profile. 610 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02464 897 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 689 893 - -
Vian3g02464 897 SMART LRR_typ_2 353 377 IPR003591 -
Vian3g02464 897 SMART LRR_typ_2 113 136 IPR003591 -
Vian3g02464 897 SMART LRR_typ_2 137 160 IPR003591 -
Vian3g02464 897 SMART LRR_typ_2 209 233 IPR003591 -
Vian3g02464 897 SMART LRR_typ_2 89 112 IPR003591 -
Vian3g02464 897 SMART LRR_typ_2 235 257 IPR003591 -
Vian3g02464 897 SMART LRR_typ_2 425 450 IPR003591 -
Vian3g02464 897 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 580 688 - -
Vian3g02464 897 SUPERFAMILY RNI-like 171 529 - -
Vian3g02464 897 Gene3D Phosphorylase Kinase; domain 1 577 688 - -
Vian3g02464 897 Gene3D Transferase(Phosphotransferase) domain 1 690 894 - -
Vian3g02464 897 Pfam Leucine rich repeat N-terminal domain 46 63 IPR013210 -
Vian3g02464 897 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 64 164 - -
Vian3g02464 897 Pfam Protein kinase domain 611 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02464 897 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 231 523 - -
Vian3g02464 897 SUPERFAMILY Protein kinase-like (PK-like) 606 885 IPR011009 -
Vian3g02464 897 FunFam Nuclear pore complex protein NUP107 34 180 - -
Vian3g02464 897 SUPERFAMILY L domain-like 53 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02464 Vian-Chr3 38311906 38314709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02464 1 889 Receptor kinase-like Gene Family AT2G41820 54.900 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian3g02464 Pkinase 9.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02464 - - vum:124827200 1729.92