Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02459 ATGAAGAATCAAGAGCCGTTTCAAACCTTCTTTTTCCTCTCCACCCTTTTGCTGCTTTTTATCTCCTCTGCAAAGGGAAAGTGCCCACCATCATTTCTTTGTGGGAACCTGGGCACTATGTATTTCCCTTACACTGACACCAAACACCCTCATTGTGGCTTGCTGGTTATGCATGGCTGCGATGACCGTGACCCAGATGCGATTAAAACGGTTAAGAACAAAGGAGAATGGAGTTTCATCACACGTGATCCAAACACAAACATCCTTGTCTTCAGAGATGATCAACTTCGTACCTTTTTGCTGACACGAAGATGTGGGGTGTTCGGCAAAAACTACACCAGTTTGGACACCTCTTCTCCTTTCCTTTCACTTCATTTTAAGACTGCTACTTTCTTCATATGCAACCGCACCCTCAACATCAATCCTCCTTCTTCAGCATTTTATAAATCTACAATATGCCCGGATGAGGACATCTTCTATGGCACATCTAATGTTGATGAGTCCTTCAGTTACTATTCCGAAGAGCTTCATGGTTCTTATTTTGAACAGTGTTCAATGGTTAGACTTCCAATAAGAGATGAGCTTGTACCTAACTCAAATGGAAGCCTCTTTGACTATGTATCAGCTGATATTCCTGTTAGAACGGAAGTGTCTTATGAATGTTCTTCTTGTTACCGTCTTAGACGAGGCCAGTGTCAACTTGACAGCCAAGGGAAATTCTTATGTATACAAGAGAAAACTAGTAGAAAGGTGAAGATAGTGGTAGCAGCTACATCAGCTGCTGGAGCAGTGGGAATTTTGATGGTCTTGGCTGGCATCTTAGGAAGATATTATTGCCACATGAAGAATCCTGCTTACATAATGATTGAGAACTTTTTGAAGCAACATGGACACCTTTCAGCCAAAAGGTACAATTACTTGGAGGTAAAGAAAATGACCAACTCCTTAAAAAAAAAATTAGGCCAAGGAGGGTTTGGTAGTGTATACAAAGGGAGGTTACAAAATGGAAGTCTTGTGGCAGTGAAGGTTTTAAGTAAGTCAAAAGGTGATGGAGAAGAATTCATCAATGAAGTTGCTAGTATTAGCATGACTTCTCATGTTAACATTGTCAGTTTACTGGGGTTTTGCTTGGAAGGCTCCAAAAGATTTCTCATATACGAGTACATGCCCAATGGATCCCTTGAAAAGTTCATATATGAAGAGAAAGATCCTTTAAGGTTTAAACTCACAATGAATTGCACGACAATGTACAATATTGCCATTGGTGTTGCTCGAGGACTGGAGTATTTGCACAAGGGTTGTAACACCAAAATCTTGCATTTTGACATAAAACCTCACAATATACTACTAGATGAGTTATTTTGCCCCAAAATATCAGATTTTGGACTTGCTAAAATATGTCCTAGAGAAAAAAGTATTGTATCATCAATGATGGTTGCCAGAGGAACCATAGGATATATCGCTCCTGAATTGTTCTGCAGAAATTTTGGTGGAGTGTCACATAAATCAGATGTATACAGTTATGGAATGATGGTTTTGGAAATGCTTGGTGCTAGGGAGAATAATAATCGCAGAGTTGATTTTTCAAGTGAAAATTACTTTCCACATTGGATTTACAACCATCTTGAATCACAACAAGATCTACAATTTCGATGCGCCAAAAATCGAAATGATGAAGAAATGGTAAGGAAAATGACTATTGTAAGTTTGTGGTGCATACAGACCGACCCTTCAAATCGACCTGCAATGACTAAAGTGGTGAAAATGATGGAAGGCAGCATTAGCTCTGTGCAAATTCCTCCCAAATCTTTCCTTTATTCATCTTCGGTTCCCCAATCCCAATCAAGTGATTCTTCATAG 1860 0.3946 MKNQEPFQTFFFLSTLLLLFISSAKGKCPPSFLCGNLGTMYFPYTDTKHPHCGLLVMHGCDDRDPDAIKTVKNKGEWSFITRDPNTNILVFRDDQLRTFLLTRRCGVFGKNYTSLDTSSPFLSLHFKTATFFICNRTLNINPPSSAFYKSTICPDEDIFYGTSNVDESFSYYSEELHGSYFEQCSMVRLPIRDELVPNSNGSLFDYVSADIPVRTEVSYECSSCYRLRRGQCQLDSQGKFLCIQEKTSRKVKIVVAATSAAGAVGILMVLAGILGRYYCHMKNPAYIMIENFLKQHGHLSAKRYNYLEVKKMTNSLKKKLGQGGFGSVYKGRLQNGSLVAVKVLSKSKGDGEEFINEVASISMTSHVNIVSLLGFCLEGSKRFLIYEYMPNGSLEKFIYEEKDPLRFKLTMNCTTMYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDELFCPKISDFGLAKICPREKSIVSSMMVARGTIGYIAPELFCRNFGGVSHKSDVYSYGMMVLEMLGARENNNRRVDFSSENYFPHWIYNHLESQQDLQFRCAKNRNDEEMVRKMTIVSLWCIQTDPSNRPAMTKVVKMMEGSISSVQIPPKSFLYSSSVPQSQSSDSS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02459 619 PANTHER RUST RESISTANCE KINASE LR10-RELATED 288 610 IPR045874 GO:0004672
Vian3g02459 619 FunFam PR5-like receptor kinase 389 602 - -
Vian3g02459 619 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Vian3g02459 619 SMART serkin_6 314 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02459 619 SUPERFAMILY Protein kinase-like (PK-like) 300 590 IPR011009 -
Vian3g02459 619 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
Vian3g02459 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Vian3g02459 619 FunFam serine/threonine-protein kinase PBS1-like 289 388 - -
Vian3g02459 619 ProSiteProfiles Protein kinase domain profile. 314 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02459 619 Pfam Protein kinase domain 317 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02459 619 Gene3D Phosphorylase Kinase; domain 1 290 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02459 Vian-Chr3 38252573 38255069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02459 11 619 Receptor kinase-like Gene Family AT5G38260 38.080 1.99e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian3g02459 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02459 - - gmx:100807312 971.844