Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02454 ATGGAGAAAGGGTTGTTGGAGTGTGTCAGAAAATTCTCAACAGCACCCTTTTTGTTGAAGACATATATGTTGGTTGAGGATCCTACGACCAATGATGTTGTGTCGTGGAATGATGACGGAACAACGTTTGTGGTGTTGCAACCTGCAGAGTTTGCTCGTGATCTTCTTCCAACTCTCTTCAACCATTGCAACTTCTCTAGCTTTGTTCGCCAGCTCAATACTTATGGTTTTCGTAAAGTTAGAACAAGCAGATGGGAATTTTGCAACGAGCGATTCAGAAAGGGTGAGAAAGAACTGTTATGCGAGATTAGACGTAAAAAATCATGGGTGAGCAAGAAGCAACATGGACCACAAGACTCAGATGAAGATCAAAGGTCCTTAGCATCAACCTTTTCTTCAAATTATGCAGTTCTGATGCATGAAAACAAGCGACTCAAGAAGGAGAATGAGGTATTGCACTCAGAGCTTACAACCATCAATACCAAGTGCAGGGACTTGCTCGATTTGGTCACCAAATATTCATGTGCAAAGGCAGAAGGACTGGATCATAAACCAATGTTGTTTCGGATAACATTGGAACAAGTTCAAGGACAAACACAGGTTAAAAACAACACCAAATAG 621 0.4138 MEKGLLECVRKFSTAPFLLKTYMLVEDPTTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFVRQLNTYGFRKVRTSRWEFCNERFRKGEKELLCEIRRKKSWVSKKQHGPQDSDEDQRSLASTFSSNYAVLMHENKRLKKENEVLHSELTTINTKCRDLLDLVTKYSCAKAEGLDHKPMLFRITLEQVQGQTQVKNNTK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02454 206 Coils Coil 135 155 - -
Vian3g02454 206 Gene3D - 9 107 IPR036388 -
Vian3g02454 206 FunFam Heat stress transcription factor B-4 9 107 - -
Vian3g02454 206 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02454 206 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 166 IPR027725 -
Vian3g02454 206 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02454 206 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02454 206 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g02454 206 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Vian3g02454 206 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02454 Vian-Chr3 38167371 38170503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02454 16 173 HSF AT2G41690 56.742 7.12e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian3g02454 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02454 K09419 - qsu:112013936 267.7