Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02427 ATGACCGCAAATGAAGATGCTGCACAGGAATTTGAGCCAAAGAAGAAGCCACCGACAGAGGATGAGAAGAGGAAGAAGAAAATTACGCCTGGGAGTTTGATGAAAGCTTTGATTAGGCCTGGTGGGGGTGATGCTGGACCGTCAGATGGTGATCAGATTATCTATCATTGCACCATTCGAACTTTGGATGGAGTACTCGTGGAATCTTCCAGATCTGATTATGGAGGAAAAGGCACTCCAATAAGGCATGTTTTGGGCAAAAGCAAGATGTTATTGGGCATACTAGAAGGAATTCCTACAATGTTGAAGGGCGAAGTGGCAATGTTCAAGATGAAGCATCAGTTGCATTATGGTGAGGATGATTGTCCTATTACCGCTCCTGATGGTTTTCCCAAGGAGGATGAACTTCATTTCGAAATTGAGCTGATAGATTTTTTCAAAACTAAGGTTGTAACTGATGATTTGGGAGTCGTAAAAAAGGTAGTGCGAGAAGGGAAGGGTTGGGAATCTCCGAGGGAACCTTATGAAGTGAAGGCTTGGATATCAGCAAAGACAGTTACTGGGAAATTGATCATGTCGCATACAGAAGGAGAACCATACTTGTTTACATTTGGAAAATCGGAGCTACCTAAGGGCCTTGAAATGGCAATAGGAACAATGGTTCGGGAAGAGAAGGCTGTTATATATGTTACCACTCAGTATTTAACTGAGTCTCCTCTGATGCCTGTAATAGAAGAGTATGATGAAGTGCATTTTGAAGTGGAGCTGGTTCACTTTATTCAGGTGAGGGACATGCTTGGAGATGGGCGCCTAATAAAACGCCGCATTCGTGATGGCAAAGGTGACTTTCCCATGGATTGTCCCCTTCATGACAGTCTACTTCGTGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAAGGTATTTTATGATACAAGGGTGGACAATGATGGTCAACCATTGGAGTTCTGTTCTGGAGAAGGGCTTGTACCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTCGTTACATGCCCTCCTGACTATGCCTATGATAAGTTTCCAAGGCCTTCAAATGTCCCTGAGGGTGCTCATATTCAATGGGAAATTGAGCTTCTAAGTTTTGAAACGCCAAAGGACTGGACAGGATTGGACTTTAAAACTATAATGAATGAAGCTGAAAGCATCAGAAACACGGGTAACAAGCTGTTCAAACAGGGGAAATATGAACTTGCCAAGGCAAAGTATGAAAAGTTGCTTCGAGAATTTAATCATATCAATCCTCAAGATGATGAAGAAGGAAAGATTTTTACAGACACACGAAATTTGCTACATCTGAATGTCGCTGCATGCTATCTGAAATTGGGAGAATGCAAAAAGTGCATTGAGACTTGCAACAAGGTTTTGGATGCAAATCCTGCACATGTCAAGGGCCTTTATCGTCGTGGAATGGCCTACATGACTGCCGGAGATTTTGAAGAAGCCAAGGCTGATTTCAAAATGATGATGAAAGTTGACAAGTCAACTGAATCAGATGCAACTGCAGCTCTTCAAAAACTGAAGCAGAAGGAACAGGAAGTCGAGAAGAAGGCTAGGAAACAGTTTAAAGGCCTATTTGATAAAAAGCCTGGAGAAATTGCGGAAGCTAAAGCTGATGATGATGAAGATCAAATAACAAGCGAAAGTCAGCAGAAGGATGAAGCACATGGGGACTCTGATGAAACAAATTTCGAGGATTCACATGAAGGTCCACCTGAGACACCTCGAACTAGGTGGTTCTCTCTCTTTTGGCCTTCTGGTAGAAGACTTTTTGAATCTCTTGGGCTTAATAGATGTGCCATACTTTAA 1869 0.4243 MTANEDAAQEFEPKKKPPTEDEKRKKKITPGSLMKALIRPGGGDAGPSDGDQIIYHCTIRTLDGVLVESSRSDYGGKGTPIRHVLGKSKMLLGILEGIPTMLKGEVAMFKMKHQLHYGEDDCPITAPDGFPKEDELHFEIELIDFFKTKVVTDDLGVVKKVVREGKGWESPREPYEVKAWISAKTVTGKLIMSHTEGEPYLFTFGKSELPKGLEMAIGTMVREEKAVIYVTTQYLTESPLMPVIEEYDEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKKVFYDTRVDNDGQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPSNVPEGAHIQWEIELLSFETPKDWTGLDFKTIMNEAESIRNTGNKLFKQGKYELAKAKYEKLLREFNHINPQDDEEGKIFTDTRNLLHLNVAACYLKLGECKKCIETCNKVLDANPAHVKGLYRRGMAYMTAGDFEEAKADFKMMMKVDKSTESDATAALQKLKQKEQEVEKKARKQFKGLFDKKPGEIAEAKADDDEDQITSESQQKDEAHGDSDETNFEDSHEGPPETPRTRWFSLFWPSGRRLFESLGLNRCAIL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02427 622 Gene3D - 148 260 IPR046357 GO:0003755
Vian3g02427 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 143 IPR001179 GO:0003755
Vian3g02427 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 257 IPR001179 GO:0003755
Vian3g02427 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 292 380 IPR001179 GO:0003755
Vian3g02427 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 260 IPR001179 GO:0003755
Vian3g02427 622 SUPERFAMILY FKBP-like 150 259 - -
Vian3g02427 622 SUPERFAMILY FKBP-like 23 149 - -
Vian3g02427 622 Gene3D Tetratricopeptide repeat domain 394 548 IPR011990 GO:0005515
Vian3g02427 622 FunFam Peptidylprolyl isomerase 261 385 - -
Vian3g02427 622 SUPERFAMILY TPR-like 397 539 IPR011990 GO:0005515
Vian3g02427 622 Gene3D - 261 387 IPR046357 GO:0003755
Vian3g02427 622 Gene3D - 1 147 IPR046357 GO:0003755
Vian3g02427 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 383 IPR001179 GO:0003755
Vian3g02427 622 FunFam Peptidylprolyl isomerase 7 149 - -
Vian3g02427 622 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515
Vian3g02427 622 Pfam Tetratricopeptide repeat 484 507 IPR019734 GO:0005515
Vian3g02427 622 MobiDBLite consensus disorder prediction 553 598 - -
Vian3g02427 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 146 IPR001179 GO:0003755
Vian3g02427 622 PANTHER INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 148 261 - -
Vian3g02427 622 SMART tpr_5 483 516 IPR019734 GO:0005515
Vian3g02427 622 SMART tpr_5 400 433 IPR019734 GO:0005515
Vian3g02427 622 SMART tpr_5 449 482 IPR019734 GO:0005515
Vian3g02427 622 FunFam Peptidylprolyl isomerase 388 544 - -
Vian3g02427 622 MobiDBLite consensus disorder prediction 1 45 - -
Vian3g02427 622 Coils Coil 517 540 - -
Vian3g02427 622 MobiDBLite consensus disorder prediction 563 593 - -
Vian3g02427 622 SUPERFAMILY FKBP-like 265 389 - -
Vian3g02427 622 MobiDBLite consensus disorder prediction 8 29 - -
Vian3g02427 622 FunFam Peptidylprolyl isomerase 150 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02427 Vian-Chr3 37638189 37661136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02427 28 548 Calmodulin-binding Proteins AT5G48570 30.697 6.01e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02427 - - gmx:100818201 1124.77