Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02426 ATGGAAGTGGAGAAGGAAAATGTTACTGCAGAACCATCTTTACCCGCCTCTGATGGTCAAGATACTATTTCTGATAATGCATCTCTACCCCATTCAATACAACCTATTATTCCACCTGTTATTGCACCTTCTGTTGTGCCTCCTTTAGCTCCAATTCCCACAATTCCTCCCCCTCGCCCACTGGCACCACTTCCAGTTCGGCCACCAGTCATTAGGCCACCTGTGCCACAAAATGGCGAGGTTAGATCAAGTGACTCTGACTCGGACAATGATGACTCAAATGCAAGAATTAACCAGGGGACTGGAGAGTATGAGATATCTGAAGAGAGTAGACTGGTGAGAGAGCGGCAGGAAAAGGCAATGCAGGAACTCATGATGAAGAGGCGGGCAGCTGCTCTTGCCGTTCCTACAAATGATATGGCTGTGCGAGCTCGGCTTCGACATCTTGGTGAGCCAATAACTCTGTTTGGTGAGAGAGAGATGGAGAGGCGGGACAGGTTGCGGATGATTATGGCGAAGCTAGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGATGAAGAGGCTGCGGCTTCTGCTCCAAAAGACGAGGCTGAGGAAGCACTGCAGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTCCTGGATGCCAGAATTTATATTGCTAAATATTCTTTGGCAAGGGCAGCATTACGGATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATAGATTGGGCATTGAGGCAGGCTGGGAATTTGAGTCTCGAATTCAGTGAAATTGGAGATGATCGGCCCCTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCCACCTGTTCTCTGACTGGCGCTTCCAAGTTGTGGAACATGCCCAAAATAAAAAAACATTCCACCTTGAAGGGGCACACAGAACGTGCTACAGATGTTGCTTTTTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATGATCAAGGATCACTTTTGAAGACATTTGAGGGTCATCTGGACCGTCTTGCCCGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGAACTGCCAGTTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGGGAGGAGTTGCTTCTTCAAGAAGGACATAGTAGAAGTGTGTATGGCCTGGCTTTCCACCGCGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATTCTTGCACTGGAAGGTCATGTCAAACCGGTTCTTGGCATCAGTTTTTCACCTAATGGATATCATCTAGCCACTGGTGGTGAAGACAACACGTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCGAATTTAATATCACAAGTTAAATTTGAACCACAAGAAGGTTACTTTTTCGTAACTGCTTCATATGACATGACTGCTAAGGTTTGGTCGGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACCTCTGTGGATGTTCTTGGAGATGGTGGCCACATTGTTACCGTCTCCCATGATCGCACCATAAAACTGTGGTCCAGCAATACGACTAACGAACAAGCAATGGATGTTGATTAA 1701 0.4662 MEVEKENVTAEPSLPASDGQDTISDNASLPHSIQPIIPPVIAPSVVPPLAPIPTIPPPRPLAPLPVRPPVIRPPVPQNGEVRSSDSDSDNDDSNARINQGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAPKDEAEEALQYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQRRRDDPDEDMDAEIDWALRQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWNMPKIKKHSTLKGHTERATDVAFSPVHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHRDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFFVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGHIVTVSHDRTIKLWSSNTTNEQAMDVD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02426 566 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Vian3g02426 566 PRINTS G protein beta WD-40 repeat signature 456 470 IPR020472 -
Vian3g02426 566 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Vian3g02426 566 SUPERFAMILY PRP4-like 120 175 IPR036285 -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 512 - -
Vian3g02426 566 SUPERFAMILY WD40 repeat-like 266 553 IPR036322 GO:0005515
Vian3g02426 566 SMART WD40_4 430 469 IPR001680 GO:0005515
Vian3g02426 566 SMART WD40_4 388 427 IPR001680 GO:0005515
Vian3g02426 566 SMART WD40_4 261 302 IPR001680 GO:0005515
Vian3g02426 566 SMART WD40_4 472 512 IPR001680 GO:0005515
Vian3g02426 566 SMART WD40_4 515 554 IPR001680 GO:0005515
Vian3g02426 566 SMART WD40_4 305 344 IPR001680 GO:0005515
Vian3g02426 566 SMART WD40_4 346 385 IPR001680 GO:0005515
Vian3g02426 566 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 432 - -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 521 IPR001680 GO:0005515
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 522 554 - -
Vian3g02426 566 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 480 556 - -
Vian3g02426 566 MobiDBLite consensus disorder prediction 1 112 - -
Vian3g02426 566 Pfam pre-mRNA processing factor 4 (PRP4) like 142 168 IPR014906 -
Vian3g02426 566 Gene3D - 437 564 IPR015943 GO:0005515
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 344 - -
Vian3g02426 566 Coils Coil 173 193 - -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 394 IPR001680 GO:0005515
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 390 - -
Vian3g02426 566 ProSitePatterns Trp-Asp (WD) repeats signature. 414 428 IPR019775 -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 437 471 - -
Vian3g02426 566 Gene3D - 252 436 IPR015943 GO:0005515
Vian3g02426 566 CDD WD40 276 554 - -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 478 IPR001680 GO:0005515
Vian3g02426 566 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 252 436 - -
Vian3g02426 566 PANTHER WD40 REPEAT PROTEIN 85 555 - -
Vian3g02426 566 MobiDBLite consensus disorder prediction 13 31 - -
Vian3g02426 566 MobiDBLite consensus disorder prediction 36 75 - -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 344 IPR001680 GO:0005515
Vian3g02426 566 Pfam WD domain, G-beta repeat 347 385 IPR001680 GO:0005515
Vian3g02426 566 Pfam WD domain, G-beta repeat 517 554 IPR001680 GO:0005515
Vian3g02426 566 Pfam WD domain, G-beta repeat 396 427 IPR001680 GO:0005515
Vian3g02426 566 Pfam WD domain, G-beta repeat 435 469 IPR001680 GO:0005515
Vian3g02426 566 Pfam WD domain, G-beta repeat 310 344 IPR001680 GO:0005515
Vian3g02426 566 Pfam WD domain, G-beta repeat 278 302 IPR001680 GO:0005515
Vian3g02426 566 Gene3D - 112 182 IPR036285 -
Vian3g02426 566 SMART pr04_2 137 190 IPR014906 -
Vian3g02426 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 522 563 IPR001680 GO:0005515
Vian3g02426 566 ProSitePatterns Trp-Asp (WD) repeats signature. 456 470 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02426 357 553 U-box Gene Family AT2G33340 21.719 5.91e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02426 K12662 - gmx:100788948 941.414