Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02424 ATGGCAACTGAAACTGACTCAAGAGATAGCGCTCTCTCTTTGCTCAAACAAGGAGCGGAGGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAGATGTGTTGTCAAGGAGCGCTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCTAAATTGACACTGAAGCGCTTAAATGCGGAGGCGAGGTGCGTGACCAAAGCAAGGAAACTTGGGGTTTGTACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACGTTTGAGTATGTCGAGGGCCCTTCAGTCAAGGATATATTTCTTGAATTTGGTTCTCGTGGCCTTGGTGAAGAGGGTCTGGACAACATTGCTACCCAAATTGGTCATTCAATTGGAAAACTGCATGATGGTGGTCTTGTTCATGGTGATTTAACAACATCAAACATGTTGCTCAAGAATGGTACCAATGAGTTGGTTCTTATTGATTTTGGTTTGAGCTTTACTTCAACTCTACCGGAAGACAAAGCAGTTGATTTGTATGTTCTGGAAAGAGCTATTCTGTCAATGCATTCTTCATGTGGCAATGTGATGGATCGGATACTTACTGCATACCGGAAGTCATCAAAACAGTGGTCATCCACATTGAACAAGTTGGCAGAAGTGAGGCAAAGAGGACGAAAGAGGACCATGGTTGGATGA 681 0.4391 MATETDSRDSALSLLKQGAEARVFESSFVGRRCVVKERFSKKYRHPTLDSKLTLKRLNAEARCVTKARKLGVCTPVLYAVDPVLHTLTFEYVEGPSVKDIFLEFGSRGLGEEGLDNIATQIGHSIGKLHDGGLVHGDLTTSNMLLKNGTNELVLIDFGLSFTSTLPEDKAVDLYVLERAILSMHSSCGNVMDRILTAYRKSSKQWSSTLNKLAEVRQRGRKRTMVG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02424 226 NCBIfam KEOPS complex kinase/ATPase Bud32 18 220 IPR022495 GO:0004674
Vian3g02424 226 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 226 IPR022495 GO:0004674
Vian3g02424 226 FunFam Protein kinase superfamily protein 107 223 - -
Vian3g02424 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Vian3g02424 226 Pfam Protein kinase domain 48 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02424 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Vian3g02424 226 Gene3D Transferase(Phosphotransferase) domain 1 109 223 - -
Vian3g02424 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02424 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Vian3g02424 226 SUPERFAMILY Protein kinase-like (PK-like) 12 174 IPR011009 -
Vian3g02424 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02424 Vian-Chr3 37604389 37606193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02424 6 160 MAP Kinase Kinase Kinase AT5G66710 26.415 3.81e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian3g02424 Pkinase 2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02424 K08851 - qsu:112039335 388.652