Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02411 ATGTCCCTCGAAGACTCCCTAAGATCTCTCTCTCTCGACTACCTCAACCTTCTCATCAATGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGTCGTCTCGTCCACGCCCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGCAAATTCTTCTGCGGCCCCGACCCTCCACCCGGCCTCGACCCCGCCGCCGCTTCGCGAGCCGGCGCCGCCTCCGCTGCGCGTCCCCCCGGCGTGATCCCGGTGAACTCGGTTGGGTACGAGGTTTTCCTGCTGCTGCTGCAGTTCCTGTACAGTGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGACCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTCGCCGCCGCCAGATACTTCGGCGTTGAACAACTTGCATTGCTCACTCAGAAACAACTTGCGAGCATGGTGGAGAAAGCTTCAATCGACGATGTGATGAAAGTGTTGATAGCATCTCGAAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGCTCCCACCTGGTGGCAAAGTCAGGACTTCCGCCGGAGGTGCTGGCCAAGCACCTCCCCATCGACGTGGTGGCCAAGATCGAGGAGCTCCGCCTCAAATCCTCCCTCGCGCGCCGCTCCATGCTGCCGCTCCGCCACCCGCACCCCGACCTCGGGGCCGCCGACATGGAGGATCAGAAAATCCGGCGGATGCGGCGCGCGCTCGACTCCTCCGACGTGGAACTCGTTAAACTCATGGTGATGGGGGAGGGCCTGAACCTGGACGAGGCGCTGGCGTTGCACTACGCCGTGGAGAGTTGCAGCAGGGAGGTGGTGAAGGCGCTGCTGGAGCTGGGCGCGGCGGACGTGAATTTCCCGGCCGGGCCGGCCGGGAAGACTCCTCTTCACGTGGCGGCGGAGATGGTATCCCCAGAGATGGTGGCGGTGTTGCTGGATCACCACGCTGACCCGAACGTGCGAACCGTGGATGGCGTGACCCCGTTGGACATCCTGAGAACCCTAACCTCGGACTTCCTCTTCAAAGGGGCGGTCCCCGGACTGACCCACATTGAACCCAACAAGCTGAGGCTCTGCTTGGAGCTGGTGCAATCTGCAGCTCTCGTTTTGTCTCGTGAAGAAGGGAACAACCACAACAACAACGCTAACAACAGCAGCAACGACAACACTAACAACCCCAACACTTCTGCTTCTGCAACTGCTATCTATCCACCAATGAGTGAAGCGCACACCAGCAGCAATTTGGACTCGAGACTGGTGTATCTGAACCTCGGCGCCACGCCACAAATAGGTGACGATGATAGCAGCAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGTGGATGTGACCCATCAATGTACCATCACTCTCATGACTTCTAG 1452 0.6033 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPPGLDPAAASRAGAASAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSMLPLRHPHPDLGAADMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNHNNNANNSSNDNTNNPNTSASATAIYPPMSEAHTSSNLDSRLVYLNLGATPQIGDDDSSSQREAMNRHGSQGGGCDPSMYHHSHDF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02411 483 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Vian3g02411 483 MobiDBLite consensus disorder prediction 449 464 - -
Vian3g02411 483 FunFam regulatory protein NPR5 isoform X2 242 359 - -
Vian3g02411 483 SMART BTB_4 25 162 IPR000210 GO:0005515
Vian3g02411 483 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Vian3g02411 483 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Vian3g02411 483 ProSiteProfiles Ankyrin repeat region circular profile. 311 341 - -
Vian3g02411 483 MobiDBLite consensus disorder prediction 449 483 - -
Vian3g02411 483 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Vian3g02411 483 SUPERFAMILY POZ domain 8 160 IPR011333 -
Vian3g02411 483 Pfam Domain of unknown function (DUF3420) 197 253 IPR024228 -
Vian3g02411 483 SMART ANK_2a 311 340 IPR002110 GO:0005515
Vian3g02411 483 SMART ANK_2a 276 306 IPR002110 GO:0005515
Vian3g02411 483 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 483 IPR044284 GO:0099402
Vian3g02411 483 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Vian3g02411 483 Gene3D - 243 359 IPR036770 -
Vian3g02411 483 MobiDBLite consensus disorder prediction 395 420 - -
Vian3g02411 483 CDD BTB_POZ_NPR_plant 8 162 - -
Vian3g02411 483 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Vian3g02411 483 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02411 Vian-Chr3 37413343 37416715 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vian3g02411 BTB 5.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02411 K14508 - gmx:100811388 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02411 3 37413343 37416715 Vian3g02411 3 37413343 37416715 ECH
Vian2g01848 2 37253826 37256325 Vian3g02411 3 37413343 37416715 PCT