Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02396 ATGATGTTCACATTTCCAACGCTTCTGTCGATGAAGTTCCAACCCTTTTGGTTGCTTCTTCTAATGTTCTTTTGTGCATTTCCCCATTCTCATCATGCTTTCAATTCTTCTGGAATTGCTTCAGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGTCTTGACAAGCAGAGTCAAGCTTCTCTCTCTTCGTGGACTGCCAACACTTCTTGCAATTGGCTCGGAATTGCATGTGATCACTCCAATCATGTCTCCCAAATAAATCTTCCAAATATTGGATTAAGAGGTACGCTTGAATATCTCAACTTCTCAATGCTTACAAACATTCACATTCTAAATCTAAGTAACAACTCCTTGAATGGAAGTATTCCTCCTCAAATTGGAGTTATGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAACTCTCTGGGATTATCCCTTCTGAAATAACACAGTTGATTAGCCTTCAGAAGTTGAACATGAGTGGTAATACTTTCAGTGAGTCCCTTCCCCAAGAAATAGGGAGATTGAGGGAGCTGAGAATGCTTCATGTTCCTTGGTGCAATCTCACAGGGACAATCCCAATATCAATAGAACAGTTGAACAATTTGATTTATCTAGATGTGGGAGGCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCACATGGACCTAAACCATTTATCACTTGCAGTTAATAAATTCCATGGTTCCATTCCCAAAGAAATTGTGAATATGAGGAACCTGGAGATTCTATATCTTTGGGAAAGTGGCCTTTCTGGCACTATGCCCCAAGAAATTGGGATGTTGGGGAAACTAATAGAGCTCGACATGAGCAGTTGTAATCTTAGTGGGTTTATACCTATTTCAATTGGAACTTTGACCAATCTATCACTTCTCAGCTTACATGACAATCAACTTTCTGGTCATATTCCTAGTGAAATTGGTAAGTTGATCAACCTCAAGATGCTATATCTTCAAAGTAATAATTTCTCTGACTCTATTCCTCGTGAAATTGGATATTTGAGCAATCTAAATAAACTTTACCTTAAAGGAAACCAATTGTCAGGTTTTATTCCTCATGATATTGGATTTTTGAGAAAACTCAGTGAACTTGATTTGTCTGAGAATTTTCTCTCTGAAAATTATCTCAGTGGCAAGATTCCAACAGAAATGAACAAGATTGTTGCTTTGGAAAACTTGCAGCTGGCTGATAATAATTTTGTTGGCCATCTACCTCACAACATTTGTGTTGGTGGAAAGTTGGCAAATTTTTCCGCTAGCAAAAACCATTTCACTGGCCATATTCCTGAGAGTTTGAAGAATTGCTCTAGCCTTATACGAGTGAGACTTCAGAAAAATCAACTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAACTTGAATTACATCGAATTGAGTGAAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGGAAGTTCCGTAGCCTCACAAGACTCAAGATCTCTAACAATAATTTATCAGGTGTTATCCCACCAGAACTAAGCGAGGCAACCGAATTACGTGAACTTCAGTTATCCTCAAATCATCTTACAGGAAGCATTCCACAAGATTTATCTAAATTGGTTTTGTTGTTTCGTCTATATCTCAACAACAATAATCTTTCAGGAAATATTCCCACAAAAATTGCATCAATGAAGAATCTTCAATTTTTGAGGCTGGGATCTAATAATTTGTCTGGGTTAATTCCACACCAACTTGGAAATTTGCTCAGTTTATTGGAAATGAATTTGAGCCAGAACAAATTTGAGGGAAATATTCCCGTAGAGCTTGGCAAATTAATATCTCTTACAACTCTTGATCTCAGTGAAAATTTGTTGAGGGGAAGATTAACACATGTGCTTGGAGGATTACAAAAATTAGAAACATTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGGTATGATGAGCTTGACATCTATTGATATATCTTACAATGATTTTGAGGGTCCACTTCCAAATATTCCAGTCTTTCGCAATGCTACAATGGACGCAGTAAGAAATAATAAAGGCTTGTGTGGCAATGTTAGTGGCTTAAAGCCTTGCCCAACACTAAGTGGGAAATCACAGAATCATACGACAAAGAAAGTCATAACAATGGTTCTACCCCTTACTTTGGGCACTCTAATGCTGGCATTGTTTGTTTTTGGAGTCTTGTATTATTTATGCAAAACTTCACTGAAAGTGGAAGACCAAGCTACCAATTTGCAAACTCCAAACACATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTTGAGAATATTGTTGAAGCCACAGAAAGCTTTGACGATAAGCATCTCATTGGAGTTGGAGGGCAAGGACAAGTTTACAAAGCAATGTTACCCTCAGGTCAAGTTGTGGCTGTAAAGAAACTTCATTCAGTTCCAAATGGAGAAAAGCTCAATGTGAAAGCTTTCACAAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATTGTAAAGATGATGAAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAACAAATGCTTTATTCTACATGCATTATGATTGCTCACCACCAATTATTCATCGTGATATATCAAGTAAAAATGTCCTTTTGGATTTGGAATATGTGGCACATGTCTCAGATTTCGGAACAGCCAAGTTTCTTAATCCCAATTCATCCAATTGGACCTCATTTGTAGGAACTTTCGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTCTGGGAAAACACCCTGGTGATTTTATATCTTCCTTATTATCATCTTCATCCACTGGTGATCATATGACATTGATGGATAAGTTGGACCAGCGTCTCCCACGACCAACAAAACGTTTAGTTAAAGAGGTGGCATCAGTTGCGAAGATAGCACTTGCTTGCATGACTGAAAGTCCACGATCTCGCCCTACTATGAAGGAGGTTGTCAATGAGCTTGTGGTGGCGGGTTATGCACTATGTTTGAGCCTTCTCACCATAATCAACAAATACGCCATCACCAAATTCAATAACTCAAGACTCTTAACGGCACTCCAATACCTCACCTCCGCGCTCGGCGTCTATGTCTTGGGGAAGTTAGGGATTCTCCACTATGACCCCTTCAACATCCTCACCGTAAAGAAATTCTTCCCTGCCGCCCTCGTCTTCTACCTCTGCCACGCCAATTGGAGAGAATGA 3324 0.3881 MMFTFPTLLSMKFQPFWLLLLMFFCAFPHSHHAFNSSGIASEANALLKWKASLDKQSQASLSSWTANTSCNWLGIACDHSNHVSQINLPNIGLRGTLEYLNFSMLTNIHILNLSNNSLNGSIPPQIGVMSNLVVLDLSANKLSGIIPSEITQLISLQKLNMSGNTFSESLPQEIGRLRELRMLHVPWCNLTGTIPISIEQLNNLIYLDVGGNNLSGSIPQRIWHMDLNHLSLAVNKFHGSIPKEIVNMRNLEILYLWESGLSGTMPQEIGMLGKLIELDMSSCNLSGFIPISIGTLTNLSLLSLHDNQLSGHIPSEIGKLINLKMLYLQSNNFSDSIPREIGYLSNLNKLYLKGNQLSGFIPHDIGFLRKLSELDLSENFLSENYLSGKIPTEMNKIVALENLQLADNNFVGHLPHNICVGGKLANFSASKNHFTGHIPESLKNCSSLIRVRLQKNQLTGNITDAFGVLPNLNYIELSENNFYGHLSPNWGKFRSLTRLKISNNNLSGVIPPELSEATELRELQLSSNHLTGSIPQDLSKLVLLFRLYLNNNNLSGNIPTKIASMKNLQFLRLGSNNLSGLIPHQLGNLLSLLEMNLSQNKFEGNIPVELGKLISLTTLDLSENLLRGRLTHVLGGLQKLETLNLSHNSLSGDLSSFDGMMSLTSIDISYNDFEGPLPNIPVFRNATMDAVRNNKGLCGNVSGLKPCPTLSGKSQNHTTKKVITMVLPLTLGTLMLALFVFGVLYYLCKTSLKVEDQATNLQTPNTFAIWSFDGKMVFENIVEATESFDDKHLIGVGGQGQVYKAMLPSGQVVAVKKLHSVPNGEKLNVKAFTSEIQALTEIRHRNIVKMMKEAIAFDWNKRVNVIKDVTNALFYMHYDCSPPIIHRDISSKNVLLDLEYVAHVSDFGTAKFLNPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILLGKHPGDFISSLLSSSSTGDHMTLMDKLDQRLPRPTKRLVKEVASVAKIALACMTESPRSRPTMKEVVNELVVAGYALCLSLLTIINKYAITKFNNSRLLTALQYLTSALGVYVLGKLGILHYDPFNILTVKKFFPAALVFYLCHANWRE 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02396 1107 SUPERFAMILY L domain-like 70 383 - -
Vian3g02396 1107 ProSitePatterns Tyrosine protein kinases specific active-site signature. 884 896 IPR008266 GO:0004672|GO:0006468
Vian3g02396 1107 ProSiteProfiles Leucine-rich repeat profile. 639 661 IPR001611 GO:0005515
Vian3g02396 1107 ProSiteProfiles Protein kinase domain profile. 788 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02396 1107 FunFam Uncharacterized protein 424 716 - -
Vian3g02396 1107 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 223 423 - -
Vian3g02396 1107 SUPERFAMILY Protein kinase-like (PK-like) 769 1030 IPR011009 -
Vian3g02396 1107 Pfam Leucine rich repeat 615 673 IPR001611 GO:0005515
Vian3g02396 1107 Pfam Leucine rich repeat 494 554 IPR001611 GO:0005515
Vian3g02396 1107 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Vian3g02396 1107 Pfam Leucine rich repeat 322 379 IPR001611 GO:0005515
Vian3g02396 1107 SUPERFAMILY L domain-like 381 711 - -
Vian3g02396 1107 Gene3D Ribonuclease Inhibitor 154 226 IPR032675 -
Vian3g02396 1107 Gene3D Ribonuclease Inhibitor 41 153 IPR032675 -
Vian3g02396 1107 FunFam Leucine-rich repeat receptor protein kinase MSP1 751 857 - -
Vian3g02396 1107 Pfam Protein kinase domain 789 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02396 1107 Pfam Protein kinase domain 856 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02396 1107 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Vian3g02396 1107 PANTHER LEUCINE RICH REPEAT KINASE 2 380 1029 - -
Vian3g02396 1107 Gene3D Phosphorylase Kinase; domain 1 750 848 - -
Vian3g02396 1107 FunFam MDIS1-interacting receptor like kinase 2 843 1033 - -
Vian3g02396 1107 Gene3D Ribonuclease Inhibitor 383 709 IPR032675 -
Vian3g02396 1107 Gene3D Ribonuclease Inhibitor 227 382 IPR032675 -
Vian3g02396 1107 FunFam Nuclear pore complex protein NUP107 39 196 - -
Vian3g02396 1107 SMART LRR_typ_2 129 152 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 296 320 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 105 127 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 613 636 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 153 177 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 637 659 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 344 368 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 397 421 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 493 517 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 201 225 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 518 541 IPR003591 -
Vian3g02396 1107 SMART LRR_typ_2 565 588 IPR003591 -
Vian3g02396 1107 Gene3D Transferase(Phosphotransferase) domain 1 849 1033 - -
Vian3g02396 1107 PRINTS Leucine-rich repeat signature 132 145 - -
Vian3g02396 1107 PRINTS Leucine-rich repeat signature 637 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02396 Vian-Chr3 37240934 37247366 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02396 33 932 Receptor kinase-like Gene Family AT4G08850 41.552 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian3g02396 Pkinase 3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02396 - - vun:114189705 1591.25