Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02394 ATGAAGTTCCAACCCTTTTGGTTGCTTCTTCTACTGTTCTTTTTTGCATTTCCCGATTCTCATGCTTTCAATTCTTCTGGAATTGCTTCAGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGTCTTGACAAGCAGAGTCAAGCTTCTCTCTCTTCATGGACTGCCAACACTTCTTGCAGTTGGCTTGGAATTGCATGTGATCACTCCAATCACGTCTCCCAAATAAATCTTCCAAATATTGGATTAAGAGGTACTCTTGAAAATCTCAACTTCTCAATGCTTACAAACATTCACACTCTAAATCTAAGAAACAACTCCTTGAATGGAAGTATTCCTCCTCAAATTGGAGTTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGTTAATAAACTCTTTGGGATTATCCCTTCTGAAATTACACAGTTGATTAGCCTTCAGAAGTTGAACATGAGTCGTAATACTTTCAGTGAGTCCCTTCCCCAAGAAATAGGGAGAATGAGGGAGCTGAGAATGCTTCATGTTCCTTATTGCAATCTCACAGGGACAATCCCAATCTCTATAGAAAAGTTGAACAATTTATTGCATCTAGATGTAGGAGCCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCACATGGACCTAAACCATTTATCACTTACAATTAATAACTTCCAAGGTTCCATTCCCAAAGAAATTGTGAATATGAGGAACCTGGAGATCCTATATCTTGGGGAAAGTGGCCTTTCTGGCACCATGCCCCAAGAAATTGACATGCTGGGGAAACTAATACATCTGATCATGAGCAGTTGTAATCTTACTGGTCACATTCCTCGTGAAATTGGTAAGTTGAGCAATCTAACTATTCTTAACCTTAAAGGAAACCAATTGTCAGGTTTTATTCCTCATGAAATTGGATTTTTGAGAAAACTCAGTGAACTTGATATGTCTGGGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAGTTATCTTTACCTTTATGGCAACCAATTATCTGGCCTTATCCCGGATGAAATAGGAAATTTGCATTCCCTTCTAACAATCCAGTTGCTGGGCAATAATCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCGTTTTACTTTATCAAAACAAACTTTCTGGATCCATTCCTTCCACTATTGGAAATTTGTCAAAGCTTCACGAATTGAATTTATTTGAAAATGATCTCAGTGGCAAGATTCCAACAGAAATGAACACGATTATTGCTTTGGAAAACTTGCAGCTAGCTGATAATAATTTTGTTGGCCATTTACCTCACAACATTTGTGTTGGTGGAAAGTTGGCAAAATTTTCCGCTAGTAATAACCATTTCACTGGCCATATTCCAGAGAGTTTGAAGAATTGCTCTAGCCTTATACGAGTTAGACTTCAGGAAAATCAACTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAACTTGGTTTACATCGAATTGAGTGAAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGGAAGTTCCGTAGCCTCACAAGCCTCAAGATCTCTAATAATAACTTATCAGGTGTTATCCCACCAGAGCTAGGCGGGGCAACCAAATTACAAGCACTTCAATTATCCTCAAATCATCTTACAGGAAACATTGCACGAGATTTATGTAATTTGGTCTTGTTGTATGATCTATCACTCAACAACAATAATCTTTCAGGAAATATTCCCATAGAAATTGTATCAATGAAGAATCTTCAAAATTTGAGGCTTGGATCTAATAATTTGTCTGGCTCAATTCCAAACCAACTTGGAAATTTGTTCAATTTATGGAACATGAATTTGAGCCTGAATAAATTTGAGGGAAATATTCCCTTAGAGTTTGGCAAATTAATATCTCTCACAACTCTTGATCTCAGTGAAAATTTGTTGAGGGGAACATTAACACATGTGCTTGGAGGATTACAAAAATTAGAAACATTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGGTATGATGAGCTTGACATCTATTGATATATCTTACAATGATTTTGAGGGTCCACTTCCAAACATTCCAGTCTTTCGCAATGCTACAATGGACGCAGTAAGAAATAATAAAGGCTTGTGTGGCAATGTTAGTGGCTTAAAGCCTTGCCCAACACTAAGTGGGAAATCACAGAATCATACGACAAAGAAAGTCATAACAATGGTTCTACCCCTTACTTTGGGCACTCTAATGCTGGCATTGTTTGTTTTTGGAGTCTTGTATTATTTATGCAAAACTTCAGTGAAAATGGAAGAGGAAGCTACCAATTTACAAACTCCAAACACATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTCGAGAATATTGTTGAAGCCACTGAAAATTTTGACGAAAAGCATCTCATTGGAGTTGGAGGACAGGGACAAGTTTACAAAGCAATGTTACCCTCAGGTCAAGTTGTGGCTGTAAAGAAACTGCATTCAGTTCCAAATGAAGAAAAGCTCAATGTGAAAGCTTTCACAAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAGTGGTCATTTATGGTGTGTGAATTCTTGGAGAAGGGCAATGTCCAGAATATTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATCAAAGATGTAGCAAATGCTTTATTCTACATGCATTATGATTGCTCACCACCAATTATTCATCGTGATATATCAAGTAAAAATGTCCTTTTGGATTTGGAATATGTGGCACATGTCTCAGATTTCGGAACGGCCAAGTTTCTTAATCCCAATTCATCCAATTGGACCTCATTTGTAGGAACCTTCGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAACGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTCTCGGAAAACACCCTGGTGATTTTATATCTGCCTTATTATCATCTTCATCCGCTGGTGATCATATGACATTGATGGATAAGTTGGAGCAGCGTCTCCCTCCTCCAACAAAACGTTTAGTTAAAGAGGTGGCATCAGTTGCGAAGATGGCACTTGCTTGCATGACTGAAAGTCCACGATCTCGCCCTACTATGAAGGATGTCGTCAATGAGCTTGTAATGTAA 3273 0.3822 MKFQPFWLLLLLFFFAFPDSHAFNSSGIASEANALLKWKASLDKQSQASLSSWTANTSCSWLGIACDHSNHVSQINLPNIGLRGTLENLNFSMLTNIHTLNLRNNSLNGSIPPQIGVLSNLVVLDLSVNKLFGIIPSEITQLISLQKLNMSRNTFSESLPQEIGRMRELRMLHVPYCNLTGTIPISIEKLNNLLHLDVGANNLSGSIPQRIWHMDLNHLSLTINNFQGSIPKEIVNMRNLEILYLGESGLSGTMPQEIDMLGKLIHLIMSSCNLTGHIPREIGKLSNLTILNLKGNQLSGFIPHEIGFLRKLSELDMSGNFLSGKIPSTIGNLSNLSYLYLYGNQLSGLIPDEIGNLHSLLTIQLLGNNLSGPIPTSIGNLVNLESVLLYQNKLSGSIPSTIGNLSKLHELNLFENDLSGKIPTEMNTIIALENLQLADNNFVGHLPHNICVGGKLAKFSASNNHFTGHIPESLKNCSSLIRVRLQENQLTGNITDAFGVLPNLVYIELSENNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPPELGGATKLQALQLSSNHLTGNIARDLCNLVLLYDLSLNNNNLSGNIPIEIVSMKNLQNLRLGSNNLSGSIPNQLGNLFNLWNMNLSLNKFEGNIPLEFGKLISLTTLDLSENLLRGTLTHVLGGLQKLETLNLSHNSLSGDLSSFDGMMSLTSIDISYNDFEGPLPNIPVFRNATMDAVRNNKGLCGNVSGLKPCPTLSGKSQNHTTKKVITMVLPLTLGTLMLALFVFGVLYYLCKTSVKMEEEATNLQTPNTFAIWSFDGKMVFENIVEATENFDEKHLIGVGGQGQVYKAMLPSGQVVAVKKLHSVPNEEKLNVKAFTSEIQALTEIRHRNIVKLYGFCSHSQWSFMVCEFLEKGNVQNILKDDEEAIAFDWNKRVNVIKDVANALFYMHYDCSPPIIHRDISSKNVLLDLEYVAHVSDFGTAKFLNPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILLGKHPGDFISALLSSSSAGDHMTLMDKLEQRLPPPTKRLVKEVASVAKMALACMTESPRSRPTMKDVVNELVM 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02394 1090 FunFam MDIS1-interacting receptor like kinase 2 899 1090 - -
Vian3g02394 1090 FunFam Uncharacterized protein 452 748 - -
Vian3g02394 1090 Gene3D Ribonuclease Inhibitor 304 499 IPR032675 -
Vian3g02394 1090 SUPERFAMILY Protein kinase-like (PK-like) 801 1088 IPR011009 -
Vian3g02394 1090 Gene3D Phosphorylase Kinase; domain 1 781 898 - -
Vian3g02394 1090 SUPERFAMILY RNI-like 218 563 - -
Vian3g02394 1090 SUPERFAMILY L domain-like 30 312 - -
Vian3g02394 1090 PANTHER LEUCINE RICH REPEAT KINASE 2 378 1090 - -
Vian3g02394 1090 FunFam Nuclear pore complex protein NUP107 28 185 - -
Vian3g02394 1090 SUPERFAMILY L domain-like 484 731 - -
Vian3g02394 1090 SMART LRR_typ_2 333 356 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 285 309 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 94 118 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 142 166 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 669 691 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 597 621 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 525 549 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 381 405 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 190 214 IPR003591 -
Vian3g02394 1090 SMART LRR_typ_2 645 668 IPR003591 -
Vian3g02394 1090 Gene3D Transferase(Phosphotransferase) domain 1 899 1090 - -
Vian3g02394 1090 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vian3g02394 1090 PRINTS Leucine-rich repeat signature 648 661 - -
Vian3g02394 1090 PRINTS Leucine-rich repeat signature 669 682 - -
Vian3g02394 1090 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 213 451 - -
Vian3g02394 1090 Pfam Protein kinase domain 821 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02394 1090 FunFam Leucine-rich repeat receptor protein kinase MSP1 783 898 - -
Vian3g02394 1090 Coils Coil 1089 1090 - -
Vian3g02394 1090 ProSiteProfiles Leucine-rich repeat profile. 671 693 IPR001611 GO:0005515
Vian3g02394 1090 Pfam Leucine rich repeat 271 320 IPR001611 GO:0005515
Vian3g02394 1090 Pfam Leucine rich repeat 647 705 IPR001611 GO:0005515
Vian3g02394 1090 Gene3D Ribonuclease Inhibitor 28 303 IPR032675 -
Vian3g02394 1090 ProSitePatterns Tyrosine protein kinases specific active-site signature. 944 956 IPR008266 GO:0004672|GO:0006468
Vian3g02394 1090 Gene3D Ribonuclease Inhibitor 614 740 IPR032675 -
Vian3g02394 1090 Gene3D Ribonuclease Inhibitor 507 613 IPR032675 -
Vian3g02394 1090 ProSiteProfiles Protein kinase domain profile. 820 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02394 Vian-Chr3 37230822 37234228 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02394 190 992 Receptor kinase-like Gene Family AT4G08850 44.378 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian3g02394 Pkinase 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02394 - - vun:114189705 1660.97