Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02382 ATGGAGGAAACATCTTCTCCTGAAGTTGTAGATTCAGAGTTATTGCTATCTATGAGTCTTGGCAATAACCAAATGGTTGGTGAGTCCTCATCCATGCCCATTTGCAATTCTTTGAAAAATCCAGTTGATTCATCTCCAAAACTAATAGAAAACCCTAATCATCAATTGATTGTGCCAAAGCAACGACAATTCTCATGCAAGTTTTGCAACAAAAAGTTTCCAAGCTCTCAAGCCTTAGGAGGGCATCAAAATGCTCACAGACGTGAAAGAGTTCTCTCAAGGATAGATAGAGAGTTTGATATGGGAACTTTTGGACTTGGTGTTCATATGTACCCTTATTCAACCATGGCTCATCAACACCCTTTTCGTGCTCCGATACCCTTTTTTTATGAGACTAACATGCACCCTATGACTCAAATGTCAACCATGCCATGGCCATTTGTACCTAGCTATGGAAATCAAGGGCTACACAACACCTCCACTTCAGGGCAACGATTTGGTATGGCCAACCTTGGAGGCTTAAATGTTGAAGCTCCACAAAATGTATACCATAGGGGATTAGGGTTTGGTTTTGAACATAACCAAGCTCATCCGTTTGATCCAACTAATGCAGCTACCATGCCTCGTCCAAGTCTTAGTGGCCTTATGAGAAATCAGTATAATATTGGGAACCAACCATTTTAA 684 0.4094 MEETSSPEVVDSELLLSMSLGNNQMVGESSSMPICNSLKNPVDSSPKLIENPNHQLIVPKQRQFSCKFCNKKFPSSQALGGHQNAHRRERVLSRIDREFDMGTFGLGVHMYPYSTMAHQHPFRAPIPFFYETNMHPMTQMSTMPWPFVPSYGNQGLHNTSTSGQRFGMANLGGLNVEAPQNVYHRGLGFGFEHNQAHPFDPTNAATMPRPSLSGLMRNQYNIGNQPF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02382 227 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 171 IPR044246 GO:0009788
Vian3g02382 227 SUPERFAMILY beta-beta-alpha zinc fingers 61 91 IPR036236 -
Vian3g02382 227 Pfam C2H2-type zinc finger 64 89 - -
Vian3g02382 227 Gene3D Classic Zinc Finger 47 100 - -
Vian3g02382 227 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vian3g02382 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02382 Vian-Chr3 37048266 37048949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02382 25 135 C2H2 Transcription Factor Family AT5G25160 32.031 2.45e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g02382 zf-C2H2_6 2.3e-06 CL0361