Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02379 ATGGATAACAACTCTTTGCCGGATGACTTGCCAAACTTTGATGATATTGGCTTCTTAGAGGATGATGAAGAATCATTAAGCTCACAGGATGACGTGGAACACTTTGGAGATGATGGCTTCTTAGAGGATAATGTGGAATTATTTCCCCCACAGGATGATGGTGATGGTAGGAACCCTTCTGAGCATGATACAGATGCTATGAAAGGCTTTACCTTTGCTGAAGTTGGTTTTATGCGCAAATGCAATAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGACAACTCCGGAGGATCACAGTCTAATTATTACCGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCATTTGATAAAATTGTTCGGTTGTGGGATGCTGCTAATCCAACCTTTTCTTTGCAGGCATATAGTGGTCATTCTTCGCATGTTTTGTCCCTTGATTTTCACCCAAGGAAAAATGATTTTTTCTGTTCCTGTGATGATATCAATGAGATTCGTTTCTGGAATATTAGCCAATATTCTTCCATCAGACGTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCGAGGGTTGGTCACCTTCTGGCTGCAGGAAGTGGGAGTTCTGTGTCTCTCTTTGATGTTGAGACTTGTAGGCCGATGCACACATTTCAGGGACACTCTGCAGATGTATCTTTCGTCTGTTGGGATCCAAACGGAGATTACTTTGCATCTATGAGTCAAGAACGTGTCAAAGTGTGGTCAATTGCAACTGGGGAATGCATTCATGAACTTAATTTTAATGGAAACATATATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACGAGGGTAAATGTCAGAGTGATGAGTTTTGGGAAAATCACATAAAGCAAAAATGGGGAAGAGTGATTGGTGATGCTGTTTACAAGGAGTGGAAAAGGCACGTAGCAATTGCCAAGGATGGAGTTTTGTTGAAGAATCAACACACCAATCAAACTGCCTCAATGGGTTCTTTTTCTGGTGTTTGGCCTAACCTATTTCTTGCTTCATACTTAGAAGATTTCAAGGTCCTCAATGTTCAAAAATCAAACAACTTCATGATGTCTTTGTATTTCTCTCTTGAGAATGGTAGCTTTTGGTTTCCTGCTCAGGTCTACAAGGGACTAATGATTCACAATGTCTTGGTTAGCTATGACTCACAATCTAATACTTTTCAAGCAAGGTATATGCAAAATGGAGACCTCTATGAATTCATGAACTGA 1350 0.4074 MDNNSLPDDLPNFDDIGFLEDDEESLSSQDDVEHFGDDGFLEDNVELFPPQDDGDGRNPSEHDTDAMKGFTFAEVGFMRKCNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTETTPEDHSLIITDVRFRPNSTQLATSSFDKIVRLWDAANPTFSLQAYSGHSSHVLSLDFHPRKNDFFCSCDDINEIRFWNISQYSSIRRFKGGSTQVRFQPRVGHLLAAGSGSSVSLFDVETCRPMHTFQGHSADVSFVCWDPNGDYFASMSQERVKVWSIATGECIHELNFNGNIYHSCVFHPSYSTLLVIGGYEGKCQSDEFWENHIKQKWGRVIGDAVYKEWKRHVAIAKDGVLLKNQHTNQTASMGSFSGVWPNLFLASYLEDFKVLNVQKSNNFMMSLYFSLENGSFWFPAQVYKGLMIHNVLVSYDSQSNTFQARYMQNGDLYEFMN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02379 449 ProSitePatterns Trp-Asp (WD) repeats signature. 97 111 IPR019775 -
Vian3g02379 449 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 30 322 IPR044716 GO:0003714
Vian3g02379 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 119 IPR001680 GO:0005515
Vian3g02379 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 152 - -
Vian3g02379 449 Gene3D - 213 354 IPR015943 GO:0005515
Vian3g02379 449 SUPERFAMILY WD40 repeat-like 72 315 IPR036322 GO:0005515
Vian3g02379 449 MobiDBLite consensus disorder prediction 14 28 - -
Vian3g02379 449 CDD WD40 82 321 - -
Vian3g02379 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 152 IPR001680 GO:0005515
Vian3g02379 449 Pfam WD domain, G-beta repeat 240 276 IPR001680 GO:0005515
Vian3g02379 449 Pfam WD domain, G-beta repeat 84 110 IPR001680 GO:0005515
Vian3g02379 449 Pfam WD domain, G-beta repeat 119 152 IPR001680 GO:0005515
Vian3g02379 449 MobiDBLite consensus disorder prediction 1 65 - -
Vian3g02379 449 SMART WD40_4 199 235 IPR001680 GO:0005515
Vian3g02379 449 SMART WD40_4 238 276 IPR001680 GO:0005515
Vian3g02379 449 SMART WD40_4 113 152 IPR001680 GO:0005515
Vian3g02379 449 SMART WD40_4 156 196 IPR001680 GO:0005515
Vian3g02379 449 SMART WD40_4 71 110 IPR001680 GO:0005515
Vian3g02379 449 SMART WD40_4 279 322 IPR001680 GO:0005515
Vian3g02379 449 Gene3D - 64 212 IPR015943 GO:0005515
Vian3g02379 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 285 IPR001680 GO:0005515
Vian3g02379 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 205 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02379 Vian-Chr3 36991296 36996922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02379 65 277 U-box Gene Family AT2G33340 26.244 7.48e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02379 - - var:108325844 910.983