Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02377 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCTGTCGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGGACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCACCCCTAGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGACGCCAGAATGGCCATCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCTTGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCGCAAGGAAATATTGGCAATTCACCAGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATAGGGGAAGTTTGAACGCTAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCCTCTAAGATTAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAATCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACGGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAATCAACTGGATGACATGGAACATTTTGGGGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGTCTGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAGCCTTATTATTACTGATGTTCGCTTCAGACCGAATTCCACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTATCTGGAATATTAACCAATATTCTTGTAGCCGAGTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCTTCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGGATGGTTGCTTCTGCCAGCCATGACAAATCTGTAAAGATTTGGAAATAA 2247 0.4401 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMAILKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPDIKGEVNMGAMQRSLPMDPSSIYGQGGMQSKPGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGLVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRIWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02377 748 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 509 541 - -
Vian3g02377 748 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 552 587 - -
Vian3g02377 748 Gene3D - 480 602 IPR015943 GO:0005515
Vian3g02377 748 Pfam LisH 10 36 IPR006594 GO:0005515
Vian3g02377 748 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 716 748 - -
Vian3g02377 748 MobiDBLite consensus disorder prediction 300 415 - -
Vian3g02377 748 SMART Lish 8 40 IPR006594 GO:0005515
Vian3g02377 748 ProSiteProfiles Trp-Asp (WD) repeats profile. 509 541 IPR001680 GO:0005515
Vian3g02377 748 MobiDBLite consensus disorder prediction 320 415 - -
Vian3g02377 748 ProSiteProfiles Trp-Asp (WD) repeats profile. 552 594 IPR001680 GO:0005515
Vian3g02377 748 Gene3D - 603 748 IPR015943 GO:0005515
Vian3g02377 748 SUPERFAMILY WD40 repeat-like 487 748 IPR036322 GO:0005515
Vian3g02377 748 ProSiteProfiles Trp-Asp (WD) repeats profile. 716 748 IPR001680 GO:0005515
Vian3g02377 748 ProSiteProfiles Trp-Asp (WD) repeats profile. 634 674 IPR001680 GO:0005515
Vian3g02377 748 Pfam WD domain, G-beta repeat 716 748 IPR001680 GO:0005515
Vian3g02377 748 Pfam WD domain, G-beta repeat 549 585 IPR001680 GO:0005515
Vian3g02377 748 Pfam WD domain, G-beta repeat 508 541 IPR001680 GO:0005515
Vian3g02377 748 Pfam WD domain, G-beta repeat 630 665 IPR001680 GO:0005515
Vian3g02377 748 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vian3g02377 748 SMART WD40_4 545 585 IPR001680 GO:0005515
Vian3g02377 748 SMART WD40_4 588 624 IPR001680 GO:0005515
Vian3g02377 748 SMART WD40_4 709 748 IPR001680 GO:0005515
Vian3g02377 748 SMART WD40_4 668 707 IPR001680 GO:0005515
Vian3g02377 748 SMART WD40_4 502 541 IPR001680 GO:0005515
Vian3g02377 748 SMART WD40_4 627 665 IPR001680 GO:0005515
Vian3g02377 748 CDD WD40 497 748 - -
Vian3g02377 748 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 748 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02377 Vian-Chr3 36933253 36953289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02377 547 747 Miscellaneous Gene Families AT5G08390 22.330 1.35e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vian3g02377 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02377 - - var:108326218 1430.23