LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g02361	ATGGGAATCTGCCATGGAAAACCCATCGAGACCCAGCAGAGTGAGAGAGAAAACCCAGAATTCCCGAGCGAAGTTCCGTCATCAACAAACCCCAAACCCTCGAAATTCCCATTCTACAGCCCGAGCCCTTTGCAGAGTTGGTTTAAAAACTCGCCGGCGAACTCAAACCCTAGCAGCGTGAGTTCCACACCGTTGAGGATCTTCAAGCGCCCCTTCCCTCCTCCGTCTCCGGCCAAGCACATTCGCGCTCTCCTCGCTCGGCGCCACGGCTCCGTGAAGCCGAACGAAGCCTCCATACCTGAAGGCAGCGAGTGTGAGATTGGGCTGGATAAGAGCTTCGGCTTCGCCAAACAGTTCTCGGCCCATTACGAGCTCGGCGAAGAAGTGGGCCGCGGCCATTTCGGCTACACCTGCTCCGCCAAGCCCAAGAAGGGCCCCCTCAAAGGCATCGACGTTGCCGTCAAAGTCATTCCGAAATCCAAGATGACTACAGCAATTGCCATAGAGGATGTAAGGAGAGAAGTGAAGATATTGCGGGCTCTAACTGGACATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGAAAATGTTTTTATAGTTATGGAGTTGTGCAAAGGAGGGGAATTGCTAGATAGGATTCTTTCCAGGGGTGGAAAGTACCCAGAAAACGATGCCAGAGTAGTTATGATCCAAATATTAAGTGTTGTAGCATTTTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGAAAATTCCACGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTGAAGCCAGATGAGAGGTTGAATGATATTGTTGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTACGGGACAGAAGCAGATATGTGGAGCATTGGTGTCATTGCTTATATTCTTTTATGTGGGAGCCGTCCCTTTTGGGCTCGGACTGAATCAGGTATATTTCGGGCTGTACTCAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCTGCTGATGCTAAAGATTTTGTAAAGAGGTTGTTGAACAAGGATTATCGTAAAAGGTTGACAGCAGCTCAGGCACTAAGTCATCCATGGCTGGTGAATCATCATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCTTACATTTGCTCATCTTCTTTACGTAAATCTGCTTTACGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTCTGTTAGGACCAAACAAGAGTGGATTAATCTCTATGCAGAACTTTAAGACGGCTGTTCTGAGGAGCTCCACAGATGCTTCAAAGGATTCAAGGGTCTTAGATTACGTGAATATGGTTAGTTCTATCCAATATAGGAAACTAGATTTTGAGGAATTTTGTGCTGCCGCTATAAGTATGCACCAACTAGAGGGAATGGAGAGCTGGGAGCAGCATGCAAGGCGAGCCTATGAGCTTTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAGGAACTTGCTTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAAGATTGGATAAGGCACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGTGCATTTCAGAAGGCTTGA	1734	0.4579	MGICHGKPIETQQSERENPEFPSEVPSSTNPKPSKFPFYSPSPLQSWFKNSPANSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEIGLDKSFGFAKQFSAHYELGEEVGRGHFGYTCSAKPKKGPLKGIDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVFIVMELCKGGELLDRILSRGGKYPENDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDMRIPLDMIIHKLVKAYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISMHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g02361	577	ProSiteProfiles	Protein kinase domain profile.	123	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian3g02361	577	MobiDBLite	consensus disorder prediction	1	38	-	-
	Vian3g02361	577	SUPERFAMILY	EF-hand	414	568	IPR011992	-
	Vian3g02361	577	PANTHER	SERINE/THREONINE-PROTEIN KINASE	110	553	-	-
	Vian3g02361	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468
	Vian3g02361	577	SUPERFAMILY	Protein kinase-like (PK-like)	115	419	IPR011009	-
	Vian3g02361	577	CDD	STKc_CAMK	122	384	-	-
	Vian3g02361	577	Gene3D	Phosphorylase Kinase; domain 1	116	212	-	-
	Vian3g02361	577	FunFam	CDPK-related kinase 1	397	569	-	-
	Vian3g02361	577	SMART	serkin_6	123	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian3g02361	577	ProSitePatterns	Protein kinases ATP-binding region signature.	129	155	IPR017441	GO:0005524
	Vian3g02361	577	Pfam	Protein kinase domain	123	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian3g02361	577	Gene3D	-	406	568	-	-
	Vian3g02361	577	FunFam	Calcium-dependent protein kinase SK5	295	390	-	-
	Vian3g02361	577	FunFam	CDPK-related kinase 3	115	287	-	-
	Vian3g02361	577	Gene3D	Transferase(Phosphotransferase) domain 1	213	405	-	-
	Vian3g02361	577	MobiDBLite	consensus disorder prediction	15	38	-	-
	Vian3g02361	577	FunFam	CDPK-related kinase 1	116	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g02361	Vian-Chr3	36641169	36647798	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g02361	1	575	EF-hand Containing Proteins	AT3G50530	66.561	0.0	845

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Vian3g02361		Pkinase	1.7e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g02361	-		-	gmx:100796678	1065.06