Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02352 ATGATGTCTCAGTCATTTGTTATGATTGCAGCATCACTGTTATTTGTTATAGCACAAAGTTTTGTGGGAGTGAATTCAGTTTCACAAGCTGATAAGATAAGCACTTTGCCAGGGCAGCCAGCAGTCAAATTCCAGCAATATGCAGGTTACATTACTGTGGATGAGAAGCAGAAGAGAGCTTTGTTTTACTACTTTGTTGAGGCAGAAGTGGAACCAGTTTCAAAGCCACTAGTTCTATGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAGCATGGCCCTTTCAAACCAAGTGAAAATGGACTTTTGAAAAATGAATTTAGCTGGAACAAAGAGGCAAATGTGCTGTACTTGGAATCACCAGCTGGTGTTGGTTTCTCCTACTCTGCCAACAAATCTTTCTATGACTATGTGAATGATGAAATGACAGCAAGGGACAATCTTGTTTTCCTACAGCGTTGGTTCACTAAATTCCCAGAGTTCAAAAACAATGATTTCTTTATCACAGGGGAAAGCTATGCAGGTCACTATGCACCCCAACTTGCACAACTCATTGTTCAAACCAAGACCAGGTTCAATCTCAAGGGAATAGCAATAGGGAATCCTCTTCTAGAATTTAACACGGATTTCAACTCTAGAGCTGAGTTTTTCTGGTCCCATGGCCTGATATCAGATTCAACTTACGAAATCTTCACCAAAGTATGCAACTATTCCCAAATTAGGAGACAGCATCAAAGTGGGACACTTACCCCCATTTGTTCAGGAGTAAATAGGCTAGTGGCAACGGAAGTTAGTAGATATATTGATACATATGATGTTACACTTGATGTGTGTCTTTCATCAGTAGATCAACAGGCTTATGTGCTGAATCAAATGACTCAACTGCAAGAGAGAGGAAAGATAGATGTTTGTGTGGAAGATGAAACTACTGCATATTTGAATAGGAAAGACGTGCAAAAAGCTCTTCACGCTAAGCTCGTAGGGATCACTTCTTGGTCAGTTTGCAGCGATATTCTTAAATATGACATGCAGAATCTAGAGATTCCAATTATTTCTATTCTTGGTGCACTTGCTAAGTCTGGTATCAGGGTTCTGGTATACAGTGGAGATCAAGATTCGGTGATCCCATTAATTGGTACAAGATCCCTGGTAAATGGGCTGGCCAAGAACTTTGGACTTAACACAACAGTGTCCTATAGAACCTGGTTTGAGGGAAGACAGGTGGCTGGTTGGACACAAGTATATGGAGACATCTTATCATTTGCCACTGTAAGAGGAGCTGCTCATGAAGCTCCATTTTCCCAGCCAGAGAGATCACTGGTGCTACTGAAAGCATTTTTGGAAGGAAAACCACTTCCACAACCATTCTTTCAAATATGA 1398 0.4106 MMSQSFVMIAASLLFVIAQSFVGVNSVSQADKISTLPGQPAVKFQQYAGYITVDEKQKRALFYYFVEAEVEPVSKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSENGLLKNEFSWNKEANVLYLESPAGVGFSYSANKSFYDYVNDEMTARDNLVFLQRWFTKFPEFKNNDFFITGESYAGHYAPQLAQLIVQTKTRFNLKGIAIGNPLLEFNTDFNSRAEFFWSHGLISDSTYEIFTKVCNYSQIRRQHQSGTLTPICSGVNRLVATEVSRYIDTYDVTLDVCLSSVDQQAYVLNQMTQLQERGKIDVCVEDETTAYLNRKDVQKALHAKLVGITSWSVCSDILKYDMQNLEIPIISILGALAKSGIRVLVYSGDQDSVIPLIGTRSLVNGLAKNFGLNTTVSYRTWFEGRQVAGWTQVYGDILSFATVRGAAHEAPFSQPERSLVLLKAFLEGKPLPQPFFQI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02352 465 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vian3g02352 465 Gene3D - 356 455 - -
Vian3g02352 465 Gene3D - 310 345 - -
Vian3g02352 465 FunFam Carboxypeptidase 26 459 - -
Vian3g02352 465 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Vian3g02352 465 Pfam Serine carboxypeptidase 38 455 IPR001563 GO:0004185|GO:0006508
Vian3g02352 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 442 IPR001563 GO:0004185|GO:0006508
Vian3g02352 465 FunFam Carboxypeptidase 356 455 - -
Vian3g02352 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vian3g02352 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vian3g02352 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Vian3g02352 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vian3g02352 465 SUPERFAMILY alpha/beta-Hydrolases 35 459 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02352 Vian-Chr3 36460086 36463278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02352 318 458 Calmodulin-binding Proteins AT2G22960 29.371 1.90e-15 72.8