Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02345 ATGAATGCTTCAAAGTCCTTTGGGAAAAGACATGAAGGTTGCTCCCGTGGCTCTTCCTCTGGCAAAGAATTGAGTGAAGTGGTTGTGAAACGCAGGAAGGTGAATCGAGCATTGGTGACATTCAGGAACTTGGTCGACAAGCTAATGCATCAGTACAAAGTGTACGAACCTGAGAATCCTAGGGTTAAGAGTAAAGCTCTGATGGAAGCAACAATGACAATGAGAAGAGAACATCAATGGGAGAACACTCAAAAGTGCGTGGGACATATACCAGGAATCGATGTGGGTGATATTTTTCAGTACTGGCTTGAACTCAATGTCATTGGCCTCCATAGGCAGTTTTGGAATGGAATTGATTATAAGATAATGGACAACAGCACGTTGGCCACAAGCATTGTGGTAACAGATCGCTATGATAATTCTAGAAGATCTAATGGTACCTTGGTTTATGAAGGTCAAGGAGGAAATCCTACCTTTGGGAAAAAAGTTTCACTTCGTGATCAAAAACTGGAAGGAGGAAATTTGGCGCTGAAAAATAGCATGCAAGCTAGAAGTCCAGTGAGAGTTATATTCAAAGTTTGTGGGAAGTTTGATGGTGCATTCAGTTACAGTAGCAGTAATTCTCATTACTCATATGTTTATGATGGTTTGTATTTGGTGGATACAATGAACATAGAAAGAGGGAGATATGGAAAGCTTGTATTCAAGTTTGGACTGCATAGAATTTTAGGACAACCTGAAACTTGCGTTTCCCTTAAGGACCATGGCGAAAATTCAAGGCAACTTGCAAATTTTAGTCCTAGGAAGAAACTCAAGCCAAAAGTCTGTGTTGCCGAAAAGGAGGTTATTCGAGTTAAAGATCTTTCAAATGGTCGGGAGAAGTTTACTATTAGGGTGGTGGCTCCAATTGATTGTGTTCAGCTACCCACATCCTTTGATTATGTTGTAAGTAACATTTACTTAAAGAAGTTCGAGCAGGCAATTCTTTGTGGCTGTGATTGTGCTGATGGGTGTGTTGACAAAGAAAATTGTGTCTGCTTCAGGAAGACAAAAGGTAGCAAAATGCCAAATGGTTGTAATAAAAGACTTGCTTCTGAGATGGAATCATCGCTTATATATGAGTGTGGCCCATCTTGCAAGTGTTCCTCTTCTTGCATCAACCGAGTAACTCAGAATGGTATTCGGTTTCAGCTAGAAATCTTCAGGACAGAACAGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTATATTGGAGAAGTCAGTGACTATATGGAGGCTAGATGGAGGCTAGATAATGACTATATATTTCACATGGGTGTTGGAAAGGTCTTCATCAATGCAAGCAAATTTGGAAACGTTGGAAGATTCATAAATCATAGTTGTGCTCCAAATCTCCGTATCAAAGATGTTATGTATGATCACAGTGACAAGAATCTTCCTCACAAAATGCTGTTTGCTTTAAAGGACATTCCTGCTGGTAGAGAGCTGACTTATGACTATAATTCCTTCATTGGAAAATTTATCAAGTGTAGGAATAATAGCTGCTGCTGTGGAACACCGGAATGCAATGGACGGATCTACATTTGA 1614 0.4021 MNASKSFGKRHEGCSRGSSSGKELSEVVVKRRKVNRALVTFRNLVDKLMHQYKVYEPENPRVKSKALMEATMTMRREHQWENTQKCVGHIPGIDVGDIFQYWLELNVIGLHRQFWNGIDYKIMDNSTLATSIVVTDRYDNSRRSNGTLVYEGQGGNPTFGKKVSLRDQKLEGGNLALKNSMQARSPVRVIFKVCGKFDGAFSYSSSNSHYSYVYDGLYLVDTMNIERGRYGKLVFKFGLHRILGQPETCVSLKDHGENSRQLANFSPRKKLKPKVCVAEKEVIRVKDLSNGREKFTIRVVAPIDCVQLPTSFDYVVSNIYLKKFEQAILCGCDCADGCVDKENCVCFRKTKGSKMPNGCNKRLASEMESSLIYECGPSCKCSSSCINRVTQNGIRFQLEIFRTEQKGWGVRTRSFIPSGSFVCEYIGEVSDYMEARWRLDNDYIFHMGVGKVFINASKFGNVGRFINHSCAPNLRIKDVMYDHSDKNLPHKMLFALKDIPAGRELTYDYNSFIGKFIKCRNNSCCCGTPECNGRIYI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02345 537 SUPERFAMILY PUA domain-like 70 252 IPR015947 -
Vian3g02345 537 MobiDBLite consensus disorder prediction 1 20 - -
Vian3g02345 537 ProSiteProfiles Pre-SET domain profile. 330 393 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian3g02345 537 SMART preset_2 285 380 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian3g02345 537 SMART G9a_1 83 245 IPR003105 -
Vian3g02345 537 ProSiteProfiles YDG domain profile. 88 241 IPR003105 -
Vian3g02345 537 SMART set_7 396 516 IPR001214 GO:0005515
Vian3g02345 537 Coils Coil 537 537 - -
Vian3g02345 537 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 29 528 - -
Vian3g02345 537 Pfam Pre-SET motif 289 388 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian3g02345 537 ProSiteProfiles Post-SET domain profile. 520 536 IPR003616 -
Vian3g02345 537 Gene3D - 70 264 IPR036987 -
Vian3g02345 537 Gene3D SET domain 265 520 IPR046341 -
Vian3g02345 537 SUPERFAMILY SET domain 275 518 IPR046341 -
Vian3g02345 537 Pfam SAD/SRA domain 87 245 IPR003105 -
Vian3g02345 537 ProSiteProfiles SET domain profile. 396 510 IPR001214 GO:0005515
Vian3g02345 537 Pfam SET domain 407 510 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02345 Vian-Chr3 36201515 36203201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02345 66 533 Su(var)3-9 homologs AT1G73100 34.961 3.80e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian3g02345 SAD_SRA 7.2e-39 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02345 - K11420 vun:114192587 959.903