Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02338 ATGAAGGAAGAAATCGCCCGTAAGTACTTTCAACATTTGATCAACGTTGTTGACTTCTTTCACAGTCGTGGCGTCACCCACCATGATTTGAAGCCAGAGAATCTACTCCTCAACGAGAACGAAGACCTGAAAGTGCGCTTGATCTTTAATTTGCTGGTTGTGGACCCAGAGAAGGGGTATTCCCTTCCTGACATCATGAAGGATCCTTGGTTCCAAGTTGGGTTCATGCGCCCCATTGTGTTTTCCATGAAGGAGACGGTTGTGGAGGATAACATCGACTTCAACAGGGACGATGTCGGTGGCAGTGGAAACGTTAGCGGCAGTGAAGATGGTAACAACAACAGCAACCATTCTAGGGAACTGGTCGGGGCCAAGCCGGCTCGTCCGTCTTACAATGCTTTCGAGATAATATCATCGCTGTCGCACGAGTTTGATCTGAGTAATCTGTTCGAGACGAGGAAGCGCTCGCCGTCGATGTTCATATCGAAGCACTCGGCGTCGTCGGTGATGGCAAAGCTAGAGGCGATGGCGAAGAAGCTGAACTTTAGGGTGACGGGGAAGAAGCAGTTCACGGTGAGAATGCAGGGAGCGACAAAAGGGAGGAAGGGAAAGCTGGGGATGATAGTGGAGGTGTTCAAGCTACAGTGA 648 0.5015 MKEEIARKYFQHLINVVDFFHSRGVTHHDLKPENLLLNENEDLKVRLIFNLLVVDPEKGYSLPDIMKDPWFQVGFMRPIVFSMKETVVEDNIDFNRDDVGGSGNVSGSEDGNNNSNHSRELVGAKPARPSYNAFEIISSLSHEFDLSNLFETRKRSPSMFISKHSASSVMAKLEAMAKKLNFRVTGKKQFTVRMQGATKGRKGKLGMIVEVFKLQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02338 215 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Vian3g02338 215 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 45 - -
Vian3g02338 215 SUPERFAMILY Protein kinase-like (PK-like) 2 72 IPR011009 -
Vian3g02338 215 ProSiteProfiles NAF domain profile. 126 151 IPR018451 GO:0007165
Vian3g02338 215 Gene3D Kinase associated domain 1, KA1 127 215 - -
Vian3g02338 215 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02338 215 MobiDBLite consensus disorder prediction 101 120 - -
Vian3g02338 215 Pfam NAF domain 130 185 IPR004041 GO:0007165
Vian3g02338 215 MobiDBLite consensus disorder prediction 98 121 - -
Vian3g02338 215 Pfam Protein kinase domain 2 45 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02338 215 Gene3D Transferase(Phosphotransferase) domain 1 1 46 - -
Vian3g02338 215 CDD CIPK_C 132 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02338 Vian-Chr3 36075392 36076604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02338 1 45 CBL-interacting serine-threonine protein kinases AT5G10930 66.667 5.52e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian3g02338 NAF 5.9e-19 CL0573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02338 - - var:108324458 310.457