Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02301 ATGGCGGTGGTTTCTTCTTCTTCTTCTTCTTCCATGTGGGTCTTCTTTTTTCTCCTTCTGGCGCTGTTCATTCACCTACAAGTAGCCATGGCCACCACCACTCCACAGATCTCTCACCTCAGGAATGTTGAAGTGAAAAAACACAGGTTGCCGAGCTTGCAGAACTCGTCAATGGCGGAGAGGGCACTGGAGGCTGAAAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAGAATAGTACACAGAGAAGGAATCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAGCGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGATTTGGCAGAAATGCCATTGGTGGTCGTGATGGAAAGTTCTATGTTGTGACTGACCCCAGGGATGATGATCCTGTGAACCCCAAACCTGGCACTCTTCGTCATGCTGTGATCCAGGACAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTAATTATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGGAAACCGATACAATGCTCCTGTTAACCCTTTTGCAAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGGTCTGAGGGAGATTTGTTGCTGAATGGTGCCTTTTTCACACCATCAGGAGCCGGAGCCTCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGTGCCAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCCGGTGCACTAGGTTGCAAAAGAGGCCGTCAGTGCTAG 873 0.4891 MAVVSSSSSSSMWVFFFLLLALFIHLQVAMATTTPQISHLRNVEVKKHRLPSLQNSSMAERALEAEKLNEQAAVANPEEVVSMVEMSIQNSTQRRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRQC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02301 290 Gene3D - 204 283 IPR012334 -
Vian3g02301 290 Gene3D - 105 203 IPR012334 -
Vian3g02301 290 SUPERFAMILY Pectin lyase-like 80 204 IPR011050 -
Vian3g02301 290 SUPERFAMILY Pectin lyase-like 204 281 IPR011050 -
Vian3g02301 290 PRINTS Pollen allergen Amb family signature 152 177 IPR018082 -
Vian3g02301 290 PRINTS Pollen allergen Amb family signature 128 145 IPR018082 -
Vian3g02301 290 PRINTS Pollen allergen Amb family signature 188 204 IPR018082 -
Vian3g02301 290 PANTHER PECTATE LYASE 18-RELATED 203 288 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02301 Vian-Chr3 35310603 35315261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02301 202 290 Polysaccharide Lyase AT1G04680 77.528 1.84e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02301 K01728 - gmx:100781845 342.043