LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g02298	ATGCGCTTCAATGCTTTCTTTTCGTTTCCTCGATTAGATTTTTCAGCCATTCTGGTTTCAGGAGTTTGTCCTCCTATTCCTTTTGCATTCTTCTCCACTCTGGCGATCCCTGGTGCAGCAGCAAAGTTGCGCCTTGGTGTTCAGCTGAGGAGCAGAGCTTTTAATGCTGCAGTTGAAATGAATAATAATTTGTGTACTACATTGTCTCCGTCAGAGAAATCTTATACTTCTCAAAATGCTCCCATCTTTAGGAGAGGCCAAACAATGCATTCTAGTGGAGCTAAAAAGATGGAGAAAGGGAAAAGTATATACTCCAAGTTTTCTTCTAAATCATCTCACCGTGATATTTCTGTTTTAGATTTGACTGAAGAGAATGGACCGAGCCAACAACTGAAACCAGCTTTTTCACTTGGTGCATCAAGAGATCATGCAACTGAAGACAGGAAAGCACCCAAAGCAACTATTGGGAACTCTTTGTTGCCAGCCATTTCAGATTCTTCTGTTACATCTAGAAATCCCTTCACTGGAAAGTGTAAACTTCCAGGTTCTAATACATCTGTGGATCGTGGCAAGGGTATTTCTCTGTCTCAGGATTCTCAATCCCAAAATGATAAGCAAGTGTCTTTGCCTCCATTTGTTTCCAGCTCTCCACGAGGTAGAGGGAACAAGAGATTGGTTCGAAATGGGTGTATTTTACCTGATAATATTGCAACAAGGGCTAAACAATTAGCTGAACAGAGACACCTTCAAAATGAAGATGTTGAACAGAGCCATGCTGATCGTGCGCTTTCTAGCAATGCAGTGTCACCGAATAGTACTGGGTTATTGGAACTTCATGAAGTTTTTGACACAAGAATTTCATACTTCTTCATTAGCCCTGTCATCAATCATGAAGAGGTCACTGGTACCAATAATGATACAAGAAATTCACTTCAATACCCTGGAGGACAAGGTGGTTGGAGAACTACTCGTAATGACCGGAATGCTAATCAGCACACGTATGATGAGCATCGCATGACGAGAAATAATGGTGTTGGAAGATTTATTAATAGGCGGAATACACACATAGTGGATGGAAGAAACATTGGGAGTGGTCAAAGCAGCGCACATGTACAACATAGTTCTCAATCAGATCATATAGCTCAACCAAGTTCTGTGATCATGCCAGATGTGGACCAGTCAGCTGTTAACCGTCCTACTGCTGACATTCTGACTAAAAGGCAAAGGAGACGTGAATCACCTGGGGAGTCATCAATGGTTGAGTTGGTATCCACACCAAGGCACAAATCATCTGAAGATTTAGATGATAACGACAACAATAGCTTGGAAGCTCGAGCAAGACAAGTGGAAGCAGATGAGATTTTGGCACGTGAACTCCAAGAACAATTGTATCATGATGATTTCATAGAAAACAGAGGGGTCGAAATGTCTGCACGGCTTCCTAGGGCAAACAGACAGCCTCCCGATCTTGATAACACTGCTCTAGCTTTGGAATTATGTGCAAGGAAAACTTTTGACAATAAGAGACTTGATATATTGGAAGCTTTAGAAAATTCAATGGGGGATTTCAATGATATGGGAATGGCTGATGGCATCTTTAATGGGCGACGTGATTTCAATGAAAGTGATTATGAAATGTTATTGGCCCTTGACGAGAGAAATCACCAACATACTGGTGCGTCTACTAATCTGATAAATAGCCTTCCACAGTCCACCATCCAGAATGACAACATGACAGAGCCATGTGCTATATGTCTTGAGACCCCAGCCAAGGGAGAAACTATTCGCCATCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGAAAAACAACATGCCCTGTATGCAAGTCATCAATCACCTAA	1884	0.4183	MRFNAFFSFPRLDFSAILVSGVCPPIPFAFFSTLAIPGAAAKLRLGVQLRSRAFNAAVEMNNNLCTTLSPSEKSYTSQNAPIFRRGQTMHSSGAKKMEKGKSIYSKFSSKSSHRDISVLDLTEENGPSQQLKPAFSLGASRDHATEDRKAPKATIGNSLLPAISDSSVTSRNPFTGKCKLPGSNTSVDRGKGISLSQDSQSQNDKQVSLPPFVSSSPRGRGNKRLVRNGCILPDNIATRAKQLAEQRHLQNEDVEQSHADRALSSNAVSPNSTGLLELHEVFDTRISYFFISPVINHEEVTGTNNDTRNSLQYPGGQGGWRTTRNDRNANQHTYDEHRMTRNNGVGRFINRRNTHIVDGRNIGSGQSSAHVQHSSQSDHIAQPSSVIMPDVDQSAVNRPTADILTKRQRRRESPGESSMVELVSTPRHKSSEDLDDNDNNSLEARARQVEADEILARELQEQLYHDDFIENRGVEMSARLPRANRQPPDLDNTALALELCARKTFDNKRLDILEALENSMGDFNDMGMADGIFNGRRDFNESDYEMLLALDERNHQHTGASTNLINSLPQSTIQNDNMTEPCAICLETPAKGETIRHLPCLHKFHKDCIDPWLQRKTTCPVCKSSIT	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	300	327	-	-
	Vian3g02298	627	CDD	RING-H2_PA-TM-RING	581	623	-	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	159	215	-	-
	Vian3g02298	627	PANTHER	SI:CH211-59O9.10	320	627	-	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	328	342	-	-
	Vian3g02298	627	FunFam	RING/U-box superfamily protein	547	627	-	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	245	259	-	-
	Vian3g02298	627	SMART	ring_2	582	622	IPR001841	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	357	391	-	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	300	439	-	-
	Vian3g02298	627	Pfam	Ring finger domain	582	623	IPR001841	-
	Vian3g02298	627	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	548	627	IPR013083	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	123	225	-	-
	Vian3g02298	627	SMART	ringv_2	581	623	IPR011016	GO:0008270
	Vian3g02298	627	SUPERFAMILY	RING/U-box	570	626	-	-
	Vian3g02298	627	ProSiteProfiles	Zinc finger RING-type profile.	582	623	IPR001841	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	72	108	-	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	72	86	-	-
	Vian3g02298	627	MobiDBLite	consensus disorder prediction	245	270	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g02298	Vian-Chr3	35195652	35203574	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g02298	507	627	C3H Transcription Factor Family	AT1G04790	62.810	6.06e-46	170

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g02298	-		-	gmx:100796218	637.491