Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02291 ATGGACATAGATGATATGGAAATGGATATTCCGCTCCCTGATGAACTGGAGTTTCTGGAATCAAATTTTCACGAACCCGAGCAAAATCAAGAAGAAGGAGAAGATCATCATTATCACTTCGCAGACCTCGAACCCCCGGCTGAACCGTACTCTCCACAACCGCCACCAGATCTCGAGGCTCCTTCGGTGGATATCGAATCAAGCGGTCACAAGCGGTCGCGTTCGAGTTCACCTCCCGAAGAGGACAAGAGAGCGAAAGTTAGGGTTACCGTCGAGGAGGTTTCCTCCGCCGAGGAGGCCGCCGACGAGGACTGGCTTCGCTACTCTCCTCCACCGCAGGAGCCGGCGGCGAAGGAAACAACGTTCGCGAAGGAGAAGACGTTGTCGAGATTCGCCTCGGAGATTGACGGCGAGTGCATGCCGATCACCGCGCCCAACGGCGACAGGGTTTATGCGAAGCTTACCCGGTTTCAAGGAGAAGAGCGCGTGAAGACGCTCGATTGCAATGGATATTCTGCTGAGCTTAGTTCCGAACCAATTAATGTTATACTTGAGAGGCTGGAGCAAGAGGCTTTTGCTAAGGCCTTGGAAGCTAGTTCTGAAGGTCAAAGTGTTCCAGATGTTCCTGAAGCACAAATGGTTAATGAGAAACTTTGGGTTGATAAATATGCTCCGAAATCCTTCACCGAGCTTCTCAGTGATGAACAGACAAATCGTGAGGTACTGTTATGGTTGAAGCAATGGGATTCTGTTGTGTTTGGATCTGAAATTCGGAGCACATCAGATGATGTTTTGTCTGCTTTGAAACGCCATTCTTCTATTGTCCACAATCAGAAACCTTTGAATTCAAAGTTTCCTAGGAAGAATGGAGGATCCAAATGGAGTAATGGGGGAAGGTATGTAAATTCTGTAAGTATGGATGACAGTGGTAGTTCAAAGAGTACTCAAGATGCATGGAGTACGAAGTCAAGGAATATTGGTCCCCCAGAACAAAAGATTGGGTCGTGGTTTGTAATGATGAGTGAGGATGGTGGGGGTCACAAGGAGAAGCATATGAAGTTAGTGGAGAAGGGACAAATTGAGAGGATCCTTCTGCTATGTGGACCACCAGGTCTTGGGAAAACAACACTAGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGTAGAGCTGCGTGACATATACACCCCAACCTTCTTGTCATCAGGAGGATGTTGTGACACTTCCGTTGGTTTTGTTGACTTCCCTTGTCCCCATTTCACCTGCTTTTTGTCTTCTAGCTTTGCTGGAATGGAGATTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCCAAGATTCTTGATGTGGTTCAAATGAACTCTGTCTTGTCTGATTCAAGGCCGAAGTGTCTGGTGGTGGATGAAATTGATGGAGCTCTTGGTGACGGTAAGGGTGCTGTGGAGGTTCTTCTAAAGATGATTTCTACCGAAAGGAAGCCTTATGCAGGGAAACAAACTGTGGGCAAAGGACAACTGGAGAGAAAGTCATCAAAAAAGGGTTCGAAAACTGCTTCGCTTTCAAGACCTGTGATATGCATTTGCAATGATCTATATGCACCTGCCTTAAGACCATTGCGTCAGGTAGCTAAGCTGACATACATATGCAAGAAGGAGGGGATGAAAGCCAGTGCAATTGCACTCACTGCTCTTGCAGAATATACAGAATGTGATATTAGATCATGCTTGAACACTCTCCAATTTCTCTCAAAGAAGAAAGAAGCTCTCAATGTGTTTGATATTGGTGCTCAAGTAGTTGGCCAGAAGGACACATCAAAGAATGTTTTTGACATCTGGAAAGAGATTTTTCATAAGCGAAGAACAAAAAAGTTGGAAAGAAAATCTCATAGAGGGAATTCCTTTGACTTTGACTCACTGTACTCCCTTGTGTCAAAACGAGGTGATAGTGACTTGATTCTGGATGGAATTCATGAAAATGTTTTGCGGCTCAATTATCATGACCCACTGATGCAGAAAACTGTCAAGTGCTTCAACAATCTTGGAGTTTATGATCTATTGCATCAATATATAGTGCATACACATAATATGTCCCTTTATGTATATTTGCCCCTAGTTGCAATTACTGTACATCATATAGTATCTCAAATTCAGAAACCAAACATTGAATGGCCAAAGTCCTATCAGAGATATCGTACAATGATGATGGAAAAGATGGACATTTTGAATAATTGGCACCACAAAATCCCACCGCATATTGCAAGGCACTTATCAGCTAGTTCCTTTGTAGAAGACTTAATTTCTCCATTGTTACATATTCTGTCCCCGCCAACTATAAGACCGGTGGCATTACAAGTACTATCTGACACGGAGAAGAATGATCTTACTCAATTAGTTAGCAAAATGGTATCATATGCTATAACATATAAAACTGTGAAATCAGATATGCCGTATCAAACCCTGAAGTCTGAAGTAGCAGATGGTTTGGCACTGTCTTTTGTTCCTCCTATCAGTGACTTTATAAACTTCAAGGATTATACTTCAAATCATTATGTGCTTTCTGTAGCTATGAAGCAGATTTTGGTGCATGAGGTTGAAAAGCATAAGATTTTACAAGTTGGTGTTGACAAAACTAGGGCTTTAGCAAATGAAGGGCATGGAATCATTGAGACTGAAACTCACAACATCCCATTAGCCAATACCAATGCTGTGGCAAGGAAATCAAATGCAAATCCCACAATAGTTTCATCAAACTTGAATACCAATAAAAGTTCAAGTACAACAGATATTGGGAAACCACAAAACGTGGGAAATATTAAAAAAGCAACCAGAAGTTCCTCCAGTTTCTTTGATAGGTTTAAAAAGGTAAATACTAAGGGCGTACAAAGTAATGACAGATCTCTACCAGAAGAAGCTATCTTGGAGAAAGATCGATACCCTTTACTTTTTAAATTTAATGAGGGCTTTACTAATGCAGTCAAAAGACCTGTCCGTATTCGGGAATTTCTATCTTAA 3018 0.4235 MDIDDMEMDIPLPDELEFLESNFHEPEQNQEEGEDHHYHFADLEPPAEPYSPQPPPDLEAPSVDIESSGHKRSRSSSPPEEDKRAKVRVTVEEVSSAEEAADEDWLRYSPPPQEPAAKETTFAKEKTLSRFASEIDGECMPITAPNGDRVYAKLTRFQGEERVKTLDCNGYSAELSSEPINVILERLEQEAFAKALEASSEGQSVPDVPEAQMVNEKLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSVVFGSEIRSTSDDVLSALKRHSSIVHNQKPLNSKFPRKNGGSKWSNGGRYVNSVSMDDSGSSKSTQDAWSTKSRNIGPPEQKIGSWFVMMSEDGGGHKEKHMKLVEKGQIERILLLCGPPGLGKTTLAHVAARHCGYHVVELRDIYTPTFLSSGGCCDTSVGFVDFPCPHFTCFLSSSFAGMEINASDDRSTSTIEAKILDVVQMNSVLSDSRPKCLVVDEIDGALGDGKGAVEVLLKMISTERKPYAGKQTVGKGQLERKSSKKGSKTASLSRPVICICNDLYAPALRPLRQVAKLTYICKKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKEALNVFDIGAQVVGQKDTSKNVFDIWKEIFHKRRTKKLERKSHRGNSFDFDSLYSLVSKRGDSDLILDGIHENVLRLNYHDPLMQKTVKCFNNLGVYDLLHQYIVHTHNMSLYVYLPLVAITVHHIVSQIQKPNIEWPKSYQRYRTMMMEKMDILNNWHHKIPPHIARHLSASSFVEDLISPLLHILSPPTIRPVALQVLSDTEKNDLTQLVSKMVSYAITYKTVKSDMPYQTLKSEVADGLALSFVPPISDFINFKDYTSNHYVLSVAMKQILVHEVEKHKILQVGVDKTRALANEGHGIIETETHNIPLANTNAVARKSNANPTIVSSNLNTNKSSSTTDIGKPQNVGNIKKATRSSSSFFDRFKKVNTKGVQSNDRSLPEEAILEKDRYPLLFKFNEGFTNAVKRPVRIREFLS 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02291 1005 Gene3D - 216 396 IPR027417 -
Vian3g02291 1005 Pfam ATPase family associated with various cellular activities (AAA) 364 521 IPR003959 GO:0005524|GO:0016887
Vian3g02291 1005 CDD AAA 362 504 - -
Vian3g02291 1005 Gene3D - 425 545 IPR027417 -
Vian3g02291 1005 MobiDBLite consensus disorder prediction 279 326 - -
Vian3g02291 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 592 IPR027417 -
Vian3g02291 1005 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 432 1004 - -
Vian3g02291 1005 CDD HLD_clamp_RFC 538 596 - -
Vian3g02291 1005 Gene3D - 546 608 - -
Vian3g02291 1005 SMART AAA_5 360 551 IPR003593 GO:0016887
Vian3g02291 1005 MobiDBLite consensus disorder prediction 18 43 - -
Vian3g02291 1005 MobiDBLite consensus disorder prediction 1 121 - -
Vian3g02291 1005 MobiDBLite consensus disorder prediction 64 105 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02291 361 668 Core DNA Replication Machinery Family AT5G22010 23.794 9.56e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02291 K11269 - gmx:100785041 1447.57