Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02278 ATGTTGATCATGCTTTTGGTGTTCATCAACTTGCTGATACAAACTCAACTTGGAGCAAGCACTGTGGTTGACCACAACACTTTCTCCTTTGTAACTTTCACTTCTGAGAGTTGCACCAATGAAAATTCAACCAGCTATGGGGATGGAGTGGCACTGGTGTTTGCTAACGATAATAGGCCCTCACCAAATGGCTCATATCTTGGCATCTTTGATCAGTCTTCACCAGGTGGGGGTTTTCAACAGCTAGCTGTAGAGATGAACACTGTCATGAATGAATTTGATCAAGATGGAAGCCACATTGGGATAGTGACGACAAGCATCACAAATCCACTTGCATCTGAGAGTCTGAATAGCACTGGCATTGACCTCAGAAGTGGAAGAGACATTGAGGTCAAAGTAGACTATGATGGATGGAGTAAAATGATTTTTGTCTCTGTGGGATACCCAGAAAGCCAATTGAAGAATGTCCTCAACCATTCAATTGACCTACCTGATATACTTCCAAGCTCCATTTATGTTGGTTTCACAGCCTCCACAGGCAACACTTTTCCTGAAAGCCACCAGGTCCTCAACTGGGTATTCACATCAGTGCCACTTCCTTTTCTTTCTGTTCAACACAGTAGAGTTGGCACCATCAAGACCTTGTTGGTAATTGCCCTGGTGTGCTTATTTCCTTTTATTTCGATAGTTGTTTGGAGAAGATATGTGAGGGGTGAAAGAGAGTTCTTAGCTGAAATATGTACCATAGGGCGTCTTAGCCACAAAAACTTAGTGAAGCTCCAAGGCTGGTGCATTGAAGGCAAGAATCTTCTCTTGGTTTATGAATACATGCAAAATGGAAGCCTTGATTACTTCATAGCCAAAGGCAGTCTGAACTGGCAACTGAGGCACAGAGTATTGACAGGATTGGCATCAGCATTACTCTACCTTCATGAAGAGAGTGGAAACCCTTTTGTTCACAGAGATGTTAAGCCAAACAATGTCATGTTGGACTCAAATCACGATGCTCATTTAGGAGATTTTGGGCTAGCAAGACTACTCAAAGGTGAAGGCTCAGTGACCACAAATCTAAATGGAACTCTAGGATATTTGGCTCCTGAACTAAGCTTCACAGGGAGAGCTACACCAGAATCAGACGTGTATAGCTTTGGCATGGTAGTTCTTGAAGTGATATGTGGGAAAAGGTTAAACTGGATCAAGCAAGGGAACAGTTTTGTGGATTCTGTGTGGAATTTGCACGCAGAAAATGATTTGGTTGAGTGTGTTGACAAAAAACTAGAGAACAAATTTGATGAGGAAGAAGCTAAAAGGGCACTGATAGTTGGTTTGGCATGTTTGCATCCTGATTCCATGTTGAGGCCAAGGATGAGAAAAGTGGTGAACATTTTTCAGAACCCAAATGAACCTTTGATGCAGTTACCAAAAGTGAGGCCAGCAGGAGTTTATGTATCAGTTTCTTGCAGTTCATCATCCTCAAACACTACCTCTAAAACTGAGATGCAGCTCCAATCATCCACAACATCATCACATGAAAAATTCAACAGTATATGA 1551 0.421 MLIMLLVFINLLIQTQLGASTVVDHNTFSFVTFTSESCTNENSTSYGDGVALVFANDNRPSPNGSYLGIFDQSSPGGGFQQLAVEMNTVMNEFDQDGSHIGIVTTSITNPLASESLNSTGIDLRSGRDIEVKVDYDGWSKMIFVSVGYPESQLKNVLNHSIDLPDILPSSIYVGFTASTGNTFPESHQVLNWVFTSVPLPFLSVQHSRVGTIKTLLVIALVCLFPFISIVVWRRYVRGEREFLAEICTIGRLSHKNLVKLQGWCIEGKNLLLVYEYMQNGSLDYFIAKGSLNWQLRHRVLTGLASALLYLHEESGNPFVHRDVKPNNVMLDSNHDAHLGDFGLARLLKGEGSVTTNLNGTLGYLAPELSFTGRATPESDVYSFGMVVLEVICGKRLNWIKQGNSFVDSVWNLHAENDLVECVDKKLENKFDEEEAKRALIVGLACLHPDSMLRPRMRKVVNIFQNPNEPLMQLPKVRPAGVYVSVSCSSSSSNTTSKTEMQLQSSTTSSHEKFNSI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02278 516 Pfam Legume lectin domain 27 197 IPR001220 GO:0030246
Vian3g02278 516 Gene3D Transferase(Phosphotransferase) domain 1 278 472 - -
Vian3g02278 516 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 197 IPR013320 -
Vian3g02278 516 Gene3D Phosphorylase Kinase; domain 1 230 277 - -
Vian3g02278 516 Pfam Protein kinase domain 240 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02278 516 Gene3D - 14 203 - -
Vian3g02278 516 SUPERFAMILY Protein kinase-like (PK-like) 230 498 IPR011009 -
Vian3g02278 516 ProSiteProfiles Protein kinase domain profile. 183 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02278 516 PANTHER - 29 227 - -
Vian3g02278 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Vian3g02278 516 MobiDBLite consensus disorder prediction 488 516 - -
Vian3g02278 516 FunFam probable L-type lectin-domain containing receptor kinase S.5 277 471 - -
Vian3g02278 516 SMART serkin_6 212 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02278 Vian-Chr3 34674844 34677312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02278 27 499 Receptor kinase-like Gene Family AT5G55830 34.233 2.20e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian3g02278 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02278 - - vun:114190285 491.5