LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g02238	ATGTATTGGGGGAAAGTTTTGGGTGGCCAGATAGGTGGTGGAGGTGTGATGGAGGAGGAGGTATGGAGGAAGGGACCATGGACTGCTGAAGAAGACAGGTTGCTTGTTGAGTATGTCAGACTGCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGAGCTGCAGATTGAGGTGGGTGAATTATCTGAGGCCTGATCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGTATAATTCTGGAGTTGCATGCAAGGTGGGGGAACAGGTGGTCAACAATTGCAAGGAGTTTACCAGGGAGAACTGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCTAAAAGTCCCTCTGATGCAGCTGAAAAGGCAAGGAATAGAGTCCTGAGGAAGCAGCAATTTCAGCAGCAGCAATTTCAGCAGCAACAGTTGCTGCAGCAGCAACAGTTGCTGCAACAGCAGCAGCAACAGTATCAGGCACAACAACAGCTACAGTTCAACTTTGACATGAAAGGCATCATGGCCTTGCTTGAGGATAACAACACATGTAGAGCACCTTATGCAGCACCTCAATCTAGACATGAAATGATCAACATGCAGCAAAACACCACAGAAGAGCAAGGATTCTCGTACTCCATGCTCAATGCCAACCTTTCAGAAACCTCATCTGAAGAAACTTTTTTGGATGGTCTGTGGAACTTGGATCATGGGAATTTCACTGTAGCTAATTCAGCAAGCAAAGTTGGTCTATATAATTTAGTTGCTCCCTTCTGTTAA	813	0.4514	MYWGKVLGGQIGGGGVMEEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRVLRKQQFQQQQFQQQQLLQQQQLLQQQQQQYQAQQQLQFNFDMKGIMALLEDNNTCRAPYAAPQSRHEMINMQQNTTEEQGFSYSMLNANLSETSSEETFLDGLWNLDHGNFTVANSASKVGLYNLVAPFC	270

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g02238	270	CDD	SANT	81	122	IPR001005	-
	Vian3g02238	270	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	72	126	IPR017930	-
	Vian3g02238	270	Pfam	Myb-like DNA-binding domain	24	71	IPR001005	-
	Vian3g02238	270	Pfam	Myb-like DNA-binding domain	77	121	IPR001005	-
	Vian3g02238	270	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	18	245	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Vian3g02238	270	SMART	sant	23	73	IPR001005	-
	Vian3g02238	270	SMART	sant	76	124	IPR001005	-
	Vian3g02238	270	FunFam	Myb transcription factor	24	76	-	-
	Vian3g02238	270	SUPERFAMILY	Homeodomain-like	23	118	IPR009057	-
	Vian3g02238	270	ProSiteProfiles	Myb-like domain profile.	23	71	IPR001005	-
	Vian3g02238	270	ProSiteProfiles	Myb-like domain profile.	72	122	IPR001005	-
	Vian3g02238	270	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	23	71	IPR017930	-
	Vian3g02238	270	CDD	SANT	26	71	IPR001005	-
	Vian3g02238	270	Gene3D	-	24	76	-	-
	Vian3g02238	270	Coils	Coil	149	176	-	-
	Vian3g02238	270	Gene3D	-	81	125	-	-
	Vian3g02238	270	FunFam	MYB-related transcription factor	81	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g02238	Vian-Chr3	33902686	33903801	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g02238	17	270	MYB Transcription Factor Family	AT4G13480	54.613	1.28e-87	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vian3g02238		Myb_DNA-binding	2.4e-16	CL0123