Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02236 ATGGCTGCCACTGCTGCAGGCATAGCTTCGTTGTTTTCTTCTTCCATTAGCAACATCAAATGTCTTCGTTCCAAGCACTGCTCCATGATGGATCCCCTTATGACAGCAATGCCGTCAAACCGCATGTCACACTTGGTGGAACCTTTGTCCATCGGAGGTACCATGTCGCATAGGTTGTGGGGCCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGCTGGTTTCTGCGGATGATGCTGGTTTCGTTGAAGAAGAGAAAGTGGAGGATAATGAAGGGGAAGTGGTGGCAGAACAAGACTCAGATGAATCCTTTGCTAGCACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCATACTTGCAGGGCTAATTCAGGATTATGGTAGCGCTGAACTAATTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATACAGTGATAGAAAATCTTGACGGAAAAGAATTCATGGGCAGAACCCTGAGGGTGAACTTCTCTAACAAACCAAAAGCAAAAGAACCCTTGTACCCTGAAACTGAGCATAAACTCTTTGTTGGGAATCTGTCATGGTCAGTAACTAATGAGATTTTGACACAAGCCTTTCAAGAATATGGAACGGTGGTTGGAGCTAGGGTCTTATATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGCTTTTCGACAAAAGCAGAGATGGAATCTGCTCTCGAAGCCTTGAATGATGTGGAACTAGAAGGAAGGGCTATGCGTGTGAGTTTGGCTCAAGGAAAACTCTGGTAG 840 0.4452 MAATAAGIASLFSSSISNIKCLRSKHCSMMDPLMTAMPSNRMSHLVEPLSIGGTMSHRLWGPRISAAVAQEELVSADDAGFVEEEKVEDNEGEVVAEQDSDESFASTKLYFGNLPYSVDSAILAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNTVIENLDGKEFMGRTLRVNFSNKPKAKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKAEMESALEALNDVELEGRAMRVSLAQGKLW 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02236 279 SUPERFAMILY RNA-binding domain, RBD 101 188 IPR035979 GO:0003676
Vian3g02236 279 Gene3D - 189 278 IPR012677 -
Vian3g02236 279 Gene3D - 67 188 IPR012677 -
Vian3g02236 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vian3g02236 279 CDD RRM2_NsCP33_like 199 274 - -
Vian3g02236 279 SMART rrm1_1 199 272 IPR000504 GO:0003723
Vian3g02236 279 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vian3g02236 279 FunFam 28 kDa ribonucleoprotein, chloroplastic 189 278 - -
Vian3g02236 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Vian3g02236 279 PANTHER OS02G0815200 PROTEIN 57 276 - -
Vian3g02236 279 FunFam 31 kDa ribonucleoprotein, chloroplastic 69 188 - -
Vian3g02236 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 269 IPR000504 GO:0003723
Vian3g02236 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Vian3g02236 279 SUPERFAMILY RNA-binding domain, RBD 191 277 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02236 Vian-Chr3 33793876 33796920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02236 200 278 Eukaryotic Initiation Factors Gene Family AT3G16380 32.911 3.26e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02236 - - gmx:100820203 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02569 2 46380641 46384298 Vian3g02236 3 33793876 33796920 PCT