Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02232 ATGGCGACCCAAATGAGCAAGAAGAGAAAGTTCGTGGCTGATGGAGTGTTTTTCGCGGAACTAAATGAGGTTTTGACACGAGAGCTGGCGGAGGATGGTTACTCTGGTGTGGAAGTGAGGGTTACGCCGATGCGCACTGAAATCATCATCAGAGCTACAAGAACCCAAGCCGTACTCGGTGAGAAGGGAAGGAGAATCAGGGAACTTACCTCGGTGGTTCAGAAGAGATTCAAGTTTCCAGAGAACAGCGTTGAACTCTACGCTGAGAAAGTCAACAACAGGGGACTTTGCGCCATAGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTCGGGGGACTTGCTGTACGCAGGATCCTTGATGTTCTTGTTGTAATTGCAGTTGTGGCTTGCTATGGTGTTTTGAGGTTTGTCATGGAGAGTGGTGCCAAGGGATGTGAGGTGATTGTGAGTGGTAAATTGAGAGCCCAGAGGGCAAAATCCATGAAGTTTAAGGATGGCTACATGATTTCTTCTGGGCAACCTGTCAAGGATTACATTGACTCTGCAGTGAGACACGTCCTCCTCAGACAGGGTGTTCTTGGCATTAAGGTGAAGATTATGCTTGATTGGGATCCTAAAGGGAAGCAGGGTCCTGTAACTCCTCTCCCTGATATTGTCACAATTCATACTCCAAAAGAGGAAGAGGAATACATCCGGCCTGCTCCAGTTCTGGCCAATGATATCGAGGTCCCTGTGGCTTGA 741 0.4872 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRILDVLVVIAVVACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPVTPLPDIVTIHTPKEEEEYIRPAPVLANDIEVPVA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02232 246 Gene3D - 1 91 IPR015946 -
Vian3g02232 246 CDD KH-II_40S_S3 5 95 - -
Vian3g02232 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 209 - -
Vian3g02232 246 ProSitePatterns Ribosomal protein S3 signature. 158 194 IPR018280 -
Vian3g02232 246 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 202 IPR036419 -
Vian3g02232 246 Pfam KH domain 20 93 IPR004044 GO:0003723
Vian3g02232 246 FunFam 40S ribosomal protein S3 93 239 - -
Vian3g02232 246 Gene3D - 93 240 IPR036419 -
Vian3g02232 246 NCBIfam 30S ribosomal protein S3 8 221 IPR005703 GO:0003735|GO:0006412|GO:0015935
Vian3g02232 246 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vian3g02232 246 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Vian3g02232 246 FunFam 40S ribosomal protein S3 1 92 - -
Vian3g02232 246 Pfam Ribosomal protein S3, C-terminal domain 129 199 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02232 Vian-Chr3 33724877 33726499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02232 1 246 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.146 9.14e-151 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02232 K02985 - gmx:100499737 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02232 3 33724877 33726499 Vian3g02232 3 33724877 33726499 ECH