Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02230 ATGGGGCGTGTTAGGACGAAGACAGTGAAGAAGTCGTCAAGGCAAGTGATAGAGAGGTATTACTCTCGCATGACGCTGGACTTCCACACCAACAAGAAGGTTCTGGAAGAGTCGCAACTCCACACCAACGACCTAGTTCGCAACTCCACACGGACAAGATTCAACGTGTGCGCCGCCATTGTCGTAAACCTCCACAGACCATCACACCCTCCAAGTGGTAGAAGACTACGACACAATGTCGCTTTAGTTGGCGTAATCCAGTCCTGGTCACCGACTCCTCCAACCAGCGGACGCCCTCCCCATGACCCAGGCCACCGCAACGCACCATCTTCTTCACCATCATAA 345 0.5333 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEESQLHTNDLVRNSTRTRFNVCAAIVVNLHRPSHPPSGRRLRHNVALVGVIQSWSPTPPTSGRPPHDPGHRNAPSSSPS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02230 114 Gene3D - 1 53 IPR036401 GO:0003735|GO:0005840|GO:0006412
Vian3g02230 114 SUPERFAMILY Rps17e-like 1 48 IPR036401 GO:0003735|GO:0005840|GO:0006412
Vian3g02230 114 Pfam Ribosomal S17 1 40 IPR001210 GO:0003735|GO:0005840|GO:0006412
Vian3g02230 114 PANTHER 40S RIBOSOMAL PROTEIN S17 1 48 IPR001210 GO:0003735|GO:0005840|GO:0006412
Vian3g02230 114 MobiDBLite consensus disorder prediction 87 114 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02230 1 48 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 77.083 2.56e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02230 K02962 - ini:109181012 78.5666