Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02229 ATGTCGATAAACCACTACTCCATGGACCTTCCCGAAACAACACTGTGGTGGCCCCAACAACAGCATCATCAGCAGCAACCCATCTTAATGGAAGCAACCCCGAATCCCTCCTCCACTTCCTGGCCCTCCGCAGACCCTCTGGGTCTCAACCTCAACCACCAAAACGACGACGTCGAAGAAGACGAAGAAGAAGAGGACCAAACAACAACCACTACACAGCAAGAGGAAACGGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACTCCCAGCGACGTGGGGAAGCTCAACCGCCTCGTAATCCCCAAGCAGCACGCCGAGAAGTACTTCCCTCTCAGCGGTGGCGGTGGCGGCGACTCGGGCGAGTGCAAGGGGCTCCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTTGTCTTGTTCGAGCGCCACCGCGCCGACGCCCACCGCCTATTCATCGGATGGAGACGCCGGCGACACGGCGACACATCGCCGGTGCACGTTAGCGGCAGGGCGGTGGGGCACGGGAAGAGTGGCGACGGGAGTAGTAAGAATGAGGGTGGCGGCGCCACTGGTGTTGGTTTGGGATGGACCAGAGGATTCTATTCTGCGCATCCTTATCCTACGCATCAGCAGCAGCTGCATAATCATCAGCCCTTGCCATACCAATATGACTGTCTTCATGCAGGAAGAGGGTCCCAAGGTCAGAGAGAAAGGAGCATAGCAGAGGGGAACAGTCCCAGTTCAAGTTCGAGTTCAAGGGTACTTAGGCTTTTTGGGGTGAACATGGAATGCCAAACTGAACATGATTCTGGACCCTCCACACCCCAATCTTCCTACAATACTACCAACATGCCCTCCACACAGGGCACACAAAACCATCACCATTTCTACCATCGTCACCAACCATACTACTACTACTAG 1026 0.5585 MSINHYSMDLPETTLWWPQQQHHQQQPILMEATPNPSSTSWPSADPLGLNLNHQNDDVEEDEEEEDQTTTTTQQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAHRLFIGWRRRRHGDTSPVHVSGRAVGHGKSGDGSSKNEGGGATGVGLGWTRGFYSAHPYPTHQQQLHNHQPLPYQYDCLHAGRGSQGQRERSIAEGNSPSSSSSSRVLRLFGVNMECQTEHDSGPSTPQSSYNTTNMPSTQGTQNHHHFYHRHQPYYYY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02229 341 MobiDBLite consensus disorder prediction 259 288 - -
Vian3g02229 341 ProSiteProfiles B3 DNA-binding domain profile. 85 193 IPR003340 GO:0003677
Vian3g02229 341 MobiDBLite consensus disorder prediction 195 224 - -
Vian3g02229 341 MobiDBLite consensus disorder prediction 31 92 - -
Vian3g02229 341 CDD B3_DNA 83 183 IPR003340 GO:0003677
Vian3g02229 341 MobiDBLite consensus disorder prediction 300 331 - -
Vian3g02229 341 MobiDBLite consensus disorder prediction 272 288 - -
Vian3g02229 341 MobiDBLite consensus disorder prediction 31 50 - -
Vian3g02229 341 Gene3D - 73 201 IPR015300 -
Vian3g02229 341 MobiDBLite consensus disorder prediction 301 327 - -
Vian3g02229 341 SUPERFAMILY DNA-binding pseudobarrel domain 80 192 IPR015300 -
Vian3g02229 341 MobiDBLite consensus disorder prediction 56 73 - -
Vian3g02229 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 310 IPR044800 GO:0003700
Vian3g02229 341 Pfam B3 DNA binding domain 85 192 IPR003340 GO:0003677
Vian3g02229 341 SMART B3_2 85 193 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02229 Vian-Chr3 33652667 33654608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02229 78 306 RAV Transcription Factor Family AT5G06250 51.477 2.18e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian3g02229 B3 8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02229 K09287 - gmx:100795470 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02229 3 33652667 33654608 Vian3g02229 3 33652667 33654608 ECH
Vian2g02528 2 45924496 45925769 Vian3g02229 3 33652667 33654608 PCT