Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02165 ATGGCCGTTCCCGCGACGGTTGCCGCCACCCAGGCTTCACTTTACGTTGGAGATCTTCACCCTGAGGTCACCGACACCCAACTATTCCAAGCCTTCCGGGAATTCGAAAGCCTCTCTTCTGTTCGCGTCTGCAGGGATTCCATGACGAGGACGTCGCTCCGTTACGCAATTCGAGCTATCAAGGTTAAAAATAATTCTTATCTCTTTGGAAAAGTGATGAGGGTCATGTGGTCACATCGCGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAGTGCCATTGAGAACCTGAATGGTTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTGTGCCTGGTAATGATTCCAAGTATACAAATTTGTACATTAAAAACTTGGATTCGGATATTACGGAAGCACTTCTTCAGGAAAAGTTCTCCACTTTTGGAAAAATTATTAGCTTGGCTATTGCAAAGGATGACAATGGGCTATCCAAGGGTTTTGCATTTGTTAACTATGATAGGCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATCGCAATTTGGTTCAAAGAATCTTTATGTTTCTAGGGCACAGAAGAAGGCTGAACGTGAGCAAATCTTGCATAATCAATTTGAGGAAAAACGCAAGGAGCAAATACTGAAATCAAAGGGCTCTAACCTTTATGTGAAGAACATTGATGACGCTGTTAGTGAAAAAGAACTACGAGATCTGTTTAGTTCATGTGGCAGAATAACTTCTGTAAAAGTTATGCGAAGTGAAAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCTGAGGAGGCTAATAAAGCCGTGAGCACTTTTTATGGATGCATGTTCCATGGTAAGCCACTGTATATTGCTTTCGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCCACTATGCACCACAACAAGCACGATTGAACGGATCTTCTGCTGCAGTTATCCCTGGTGGCTTTTCATCTTACTTCTATCCAAATGTTACTTCACATATGCTTCAATCTGGGCTTTTGTATCAACCTCTGGGATTGGGACCAGGATGGAGGACTAATGACTTTACGCTTCCTACTAGATCATTTCAACAATCACAGGTTCCTATTGTTCCTAGCACTAATAGGAATCATAGGCTAAATAGGGGAAGAATGAATGGGCATACAAATTCAGTGGGAAAAGCTCACTCTGGTGTATATATCCCGCAACTGCAACACTATTATCAGGCGATGGACTCAAGAGAGTACCTGACAGGTTTGCTTCTTTGTCAAGACACCATGCACTACCCTCTTTGTTTTTTGCATTTTGTAATTCTTAACTGCAATGATTTATGTTATCTTGCACAGCTTAGCTGCGAAGATTCCAGGAATGCTTATGGAGAGACACTTCCTGCGTAA 1506 0.425 MAVPATVAATQASLYVGDLHPEVTDTQLFQAFREFESLSSVRVCRDSMTRTSLRYAIRAIKVKNNSYLFGKVMRVMWSHRDPNARKSGRGNVFVKSKGYGFVQFESEESANSAIENLNGSTVRDKQIYVGKFVRKGDRIVPGNDSKYTNLYIKNLDSDITEALLQEKFSTFGKIISLAIAKDDNGLSKGFAFVNYDRPDDARKAMEAMNGSQFGSKNLYVSRAQKKAEREQILHNQFEEKRKEQILKSKGSNLYVKNIDDAVSEKELRDLFSSCGRITSVKVMRSEKGISKGFGFVCFSNPEEANKAVSTFYGCMFHGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSSAAVIPGGFSSYFYPNVTSHMLQSGLLYQPLGLGPGWRTNDFTLPTRSFQQSQVPIVPSTNRNHRLNRGRMNGHTNSVGKAHSGVYIPQLQHYYQAMDSREYLTGLLLCQDTMHYPLCFLHFVILNCNDLCYLAQLSCEDSRNAYGETLPA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02165 501 SMART rrm2_1 149 221 IPR003954 GO:0003676
Vian3g02165 501 SMART rrm2_1 43 130 IPR003954 GO:0003676
Vian3g02165 501 SMART rrm2_1 252 324 IPR003954 GO:0003676
Vian3g02165 501 FunFam Polyadenylate-binding protein 234 342 - -
Vian3g02165 501 SUPERFAMILY RNA-binding domain, RBD 248 339 IPR035979 GO:0003676
Vian3g02165 501 Gene3D - 137 230 IPR012677 -
Vian3g02165 501 Gene3D - 5 89 IPR012677 -
Vian3g02165 501 Gene3D - 231 351 IPR012677 -
Vian3g02165 501 PANTHER OS02G0815200 PROTEIN 95 226 - -
Vian3g02165 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 134 IPR000504 GO:0003723
Vian3g02165 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 225 IPR000504 GO:0003723
Vian3g02165 501 SMART rrm1_1 252 324 IPR000504 GO:0003723
Vian3g02165 501 SMART rrm1_1 149 221 IPR000504 GO:0003723
Vian3g02165 501 SMART rrm1_1 13 130 IPR000504 GO:0003723
Vian3g02165 501 SUPERFAMILY RNA-binding domain, RBD 13 136 IPR035979 GO:0003676
Vian3g02165 501 CDD RRM_SF 14 129 - -
Vian3g02165 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 328 IPR000504 GO:0003723
Vian3g02165 501 CDD RRM4_I_PABPs 250 328 - -
Vian3g02165 501 Coils Coil 220 240 - -
Vian3g02165 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 56 IPR000504 GO:0003723
Vian3g02165 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 321 IPR000504 GO:0003723
Vian3g02165 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 218 IPR000504 GO:0003723
Vian3g02165 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 127 IPR000504 GO:0003723
Vian3g02165 501 Gene3D - 90 136 IPR012677 -
Vian3g02165 501 FunFam Polyadenylate-binding protein 139 233 - -
Vian3g02165 501 SUPERFAMILY RNA-binding domain, RBD 139 231 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02165 Vian-Chr3 31306364 31310399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02165 12 455 Eukaryotic Initiation Factors Gene Family AT2G36660 48.889 2.60e-149 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02165 K13126 - gmx:100798828 667.151