Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02160 ATGGGGGACAAGCACCATCTCGACGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGTGGCTACCACGCTATCCGAATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGTCTAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACATCAAACATTCTAGGTATGTGGCTTTGAAGGTTCAGAAGAGTGCTCAGCACTACACCGAGGCGGCCATGGATGAGATAACGATTTTGCAACAGATTGCGGAGGGAGACCCTGACGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCCAATGGGCAGCATGTCTGCATGGTGTTTGAGTACCTTGGGGACAATCTTTTGACACTTATTAAGTACTCTGATTACCGTGGATTGCCTATCGCCATGGTTAAGGAGATTTGCTTTCATATTCTGGTTGGATTGGATTACTTGCACAAACAGCTTTCCATCATACATACTGACTTGAAGCCTGAAAACATCCTGCTTTTGTCGATGATTGATCCATCTAAGGATCCTAGGAAGTCTGGGGCGCAGATTATTCTTCCTAATAGTAAGGACAAGATGGTGCTAGAGTCGTCAGGTGTGAAAGATACAAAGATGTTGAATGGGGATTTGGTTATGAATCACAAGAAGAAGATTAAGAGAAAAGCTAAACAAGCAGCCCATGGTTGTTTTGAGGAAGTTTCTGAAGGAGTTGAGGGTAATCCTGAAACTTCTGGGGCTGTGGAGTCGTCTCCTAATGCGAGTTCTACAAGGGCTTCCAGTTCTGCAGGAACTAGTAGGTTATGGGATGCTGATGGAACAAAGTTGAAAGAGCAGGGTAACAAAAGAGGAAGCCGATCAATGAGACAGAAGCTGCTGGCATCGGTTGATCTCAAGTGCAAGTTAGTGGACTTTGGTAATGCCTGCTGGACATATAAACAGTTTACTAATGATATCCAGACAAGACAGTATCGGTGCCCAGAGGTGATTCTTGGGTCAAAATATTCTACGTCTGCCGATCTTTGGTCCTTAGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGATGAGGACCACTTAGCATTAATGATGGAACTTCTTGGATCGATGCCACGTAAGATAGCACTAGGGGGGCGTTATTCCCGTGATTTCTTTAATAGATATGGTGATTTAAGGCACATCCGGAGATTGCGATTCTGGCCTTTGAATAAAGTCCTCATGGAGAAGTACGATTTCAGTGAGAAAGATGCAAATGATTTGACGGACTTTTTGGTTCCTATTCTTAATTTTGTTCCCGAAAAGCGGCCTTCAGCTGGTCAGTGTCTTCTGCATCCTTGGATCAATGGAGCTCCACGTCTTTTGGAGCCATCCGTGTCTTCTAATCACAACCCAGCTGCTGGAACTGCTGTTTTGGATCAGAAGAAAAGGGAAAAAGATGAGAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGTTATCAATTCAGATTCTAAATCACTGATGCAATCACCATCAAAGAAAGCTTTCCAATCCACCCAGCAGTAG 1623 0.4566 MGDKHHLDDSSDFTSEDEGTEDYRRGGYHAIRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDIKHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIAMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAQIILPNSKDKMVLESSGVKDTKMLNGDLVMNHKKKIKRKAKQAAHGCFEEVSEGVEGNPETSGAVESSPNASSTRASSSAGTSRLWDADGTKLKEQGNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSLACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGSMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDLTDFLVPILNFVPEKRPSAGQCLLHPWINGAPRLLEPSVSSNHNPAAGTAVLDQKKREKDEREAMEAGMGNIVINSDSKSLMQSPSKKAFQSTQQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02160 540 SMART serkin_6 42 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02160 540 FunFam CMGC/SRPK protein kinase 28 127 - -
Vian3g02160 540 MobiDBLite consensus disorder prediction 497 511 - -
Vian3g02160 540 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Vian3g02160 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vian3g02160 540 SUPERFAMILY Protein kinase-like (PK-like) 36 484 IPR011009 -
Vian3g02160 540 MobiDBLite consensus disorder prediction 1 21 - -
Vian3g02160 540 MobiDBLite consensus disorder prediction 284 298 - -
Vian3g02160 540 CDD STKc_SRPK 31 473 - -
Vian3g02160 540 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 12 499 - -
Vian3g02160 540 Gene3D Phosphorylase Kinase; domain 1 18 124 - -
Vian3g02160 540 ProSiteProfiles Protein kinase domain profile. 42 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02160 540 MobiDBLite consensus disorder prediction 257 281 - -
Vian3g02160 540 Pfam Protein kinase domain 42 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02160 540 Pfam Protein kinase domain 306 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g02160 540 MobiDBLite consensus disorder prediction 518 540 - -
Vian3g02160 540 MobiDBLite consensus disorder prediction 246 301 - -
Vian3g02160 540 MobiDBLite consensus disorder prediction 483 540 - -
Vian3g02160 540 FunFam Serine/threonine-protein kinase SRPK-like protein 303 473 - -
Vian3g02160 540 Gene3D Transferase(Phosphotransferase) domain 1 125 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02160 Vian-Chr3 31205109 31216275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02160 7 524 EF-hand Containing Proteins AT5G22840 69.407 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vian3g02160 Pkinase 3.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02160 K08832 - gmx:100803070 985.326