LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian3g02130	ATGAACCCCACCGATGACAACTCTCCCAAGCCCTTGGAGGTTCTGCAGATGAACCCGGTTCCGCCGTTTCTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCCATCATCTCCTGGGCCTCCTCCGGCTTTAGCTTCGTCGTCTGGGACCCTCTGGAGTTCGCCAGAGTCGTCTTGCCGCGACATTTCAAGCACAACAACTTCTCCAGTTTCGTTCGCCAGCTTAATACTTATGGATTCCGGAAGATTGACACGGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCACCACAATCCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTTCTACCACTGAGGCAGGGAGGTCTGAGGTTGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATCTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAGCAACGAAGAACTGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTGCAATCTGCAGAACAAAGGCAGAAAAAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTAAGGCAAAAGAAAGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGCAGAAGCTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGACAAATATAGACATGTCTTCTGAATCTCCAAAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCGGGAGAAATGAGTGGAGGTGCACAAGATCTCACTGTTCAAATTCAGAATATTGTAACAGATGATTTGGCTGCAGTGCACAGGATCACATCACCTCAAGAAACGATGATTGGAGAAGGATCATCTGAAGACCTCCTTGTCAAAGGGAAGAGTGTTATGAGCCCTAGTCTAGAACTTCCTCCAGATTATTTTACTTCCTTCCCAGAGGTTTTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAGCTGAAGACATTATCAAGCTTGAAGATATATGGGATACTGGCCTCAATCTTAGTGGTGTTGGTGTTGGTTCAAGCTGTGGGAATGAGCTGTGGGGAAATCCTATGAATTATGAACATGTTCCAGAGTTTGGAGTAACAAGTGGCATGTCTGAGTCAGACATGTGGGATATTGGCTCTGGAAGTTTGGGAATTGATAAGTGGGCAGGTGATGAACCTTCTGTTGGTGAACTAGATGGTCAATCTGGTAAGCCAAAAGAAGACAGGCCTCAGAATCTTGATCCATAG	1371	0.4602	MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSPQSQQVGSYIGIGSSTTEAGRSEVEVEVEIEKLRKERTILMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKKMVSFLAKLIQNPAFLARLRQKKEQREIDSPRVVRKFVKQHQHETGTAEALQEGQIVRYQPDWTNIDMSSESPKLSPVSIEQSPHYLSQGLAGEMSGGAQDLTVQIQNIVTDDLAAVHRITSPQETMIGEGSSEDLLVKGKSVMSPSLELPPDYFTSFPEVLTQEKGFQDFSALGAEDIIKLEDIWDTGLNLSGVGVGSSCGNELWGNPMNYEHVPEFGVTSGMSESDMWDIGSGSLGIDKWAGDEPSVGELDGQSGKPKEDRPQNLDP	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian3g02130	456	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian3g02130	456	PRINTS	Heat shock factor (HSF) domain signature	23	46	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian3g02130	456	PRINTS	Heat shock factor (HSF) domain signature	74	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian3g02130	456	SMART	hsfneu3	19	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian3g02130	456	Pfam	HSF-type DNA-binding	23	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian3g02130	456	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	9	245	IPR027725	-
	Vian3g02130	456	FunFam	Heat stress transcription factor B-4	15	113	-	-
	Vian3g02130	456	ProSitePatterns	HSF-type DNA-binding domain signature.	62	86	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vian3g02130	456	Gene3D	-	15	113	IPR036388	-
	Vian3g02130	456	Coils	Coil	137	164	-	-
	Vian3g02130	456	MobiDBLite	consensus disorder prediction	423	456	-	-
	Vian3g02130	456	MobiDBLite	consensus disorder prediction	442	456	-	-
	Vian3g02130	456	SUPERFAMILY	"Winged helix" DNA-binding domain	19	112	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian3g02130	Vian-Chr3	30277307	30280095	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian3g02130	9	419	HSF	AT5G03720	45.215	6.90e-105	316

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vian3g02130		HSF_DNA-bind	1.8e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian3g02130	K09419		-	gmx:100780835	730.324