Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02127 ATGGAGAACTCGCGTAGACCGTTCGATAGATCGCGAGAGCCTGGACCGAAGAAGCCCAGATTGATGGAAGAGCTGGACCGGGCTCCGAATTCTGGTGCGAGACAGTTTCCTCAGCTACAAGTGATTTCTGGGGTTTCGACGTTACCGTCTGCAAGGTTTAGAACAACCGAAAGAGACGTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCAGAACTTACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTTTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAACTGGGCTTCACTTCTGCAGTCAATGGCTCATCTGCTTCTTCTACTCTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATTCATGTTAATCCCAAGTATTTAGAAAGACAACGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGATGACCAAGAGATGCCTGGTAGAACTTTAGGTGTTTTACGATCATGGGTGGATCATAATGTTACTAATGATCATCGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACTGGTGCATCCTATGGGAGCAATGAACTTGGTTCCAATATTTCAAGGAATTTAGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACCGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCAGGGACCATGCCTGGGCAAAGAAATGGTTTGAGTAACAAGTATAGTTTTTCAAGTACTGAAGCATCAAAGTCCATGGTTTTGGATGCACATCATCAACCGGCACATAATATAACTAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCTTGACTGGTCACGGTACATCTATTGTTAGCAGCTTGAGCAAAGATACTTGGACTGCTGATGATGAGAATTTGGAAGTTGAAGATCGCATCCAAGTCAAAAATCCTTTTGTGGTAAATGCTGATAGAGAAATAGTTATTGAATCTCAAGCCAATGAAAAGAAACAATTTCCTGCATCTCAACATCATTCATCACTATCATGGCAATTGCAGGAGCAGCATTCTATTAATGAGTTGAATCGAAAAGCTGGTCACTCCAGCAGATTTGTGTCCGCACTTGGTGCCATACCGTCCAATACAAATGCCTCTACTGCCAGAATGGGGAGTCGGCCATTCCTTTCAAGTGCAACCATAGGATTGCCAGGAATTGCAGGACCCTTTCATTCTTTGGGAGCTGAAAACCCTTCAGGGCAGTCACCTTTGCAGCGGAGGTCTCCATCACCACCAGTAAGTGTGCACTATTCTCATCCTGTGCAAAATTTGGCTGAGCAAGACCTTCCCCAGACATATAAGGCATCTGGATTTCTGGGAGGTCTTCAGAGCCCCTATATTAAAGATTCTTCAACTGCTCTTCCCCCTAATATTCAGGATGGTCACTTACAAAGATCACAACTGAAAAATTTGCAGGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAGCAATTGGGCACTTCTCTTGAGGTTACTGTTAAGACTGAGAAGCCACCTGTGTCCAAGGTTCCTTTAGTCAGAGAAACTAAAAGTAGCATGAGTACAGGGAATCTTCCAACTCGATTAGGTGTTCGGCCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCATTGTCCACAAGTGCATTACCATCTTCATTAGGTCCTTCTGGTGATAATTCATCTGCTCTCTCAAAAATGCCTCAAAGAAAGGCTGGACAACCACCTAGGTTATCTACTCTACCATCTACTGCCTCTAATGTCAGCAGTGCCTCTGCCCAGACAAGTGATACCAATCATAACTTGAATCCAATTGCCAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAATCAACATCTAAGGAGCCCTCTGAGTTGCTGACTCGACTGGAAGAAGAAAGCGATAGCATTACCACCGGTAACTCTTTGCCTGTGGCCTCAATTTCTGGTTCTGCAGCTGTACCAGTCCCTTCAATCAAAGATGAGGTTGATGACACTGCAAGAACGCCCATATCCTTGTCTGAATCAACCAGTCCAGGAGTAGTAAATCTCATTGGCTTTGAGTTTAAGCATGATGTATTACGAGAATTCCATTCATCTGTAATTAGTGGATTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAAAAACAGTTCAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGAGAATGGTTTAACTAAGGCAGTGAGATGGTATCTTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATATGTATCAGAGAATGATGCTGATTCTGTAGATACTTATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTATGGTTGTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGCGGTGAGCTATTTGAAGATTTTTACTGTGAGGAAAGTGGGGAATGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTAATAGCAACAGTGAGATGGGAACTGGAGATATGAGGACAGGATTAAATCAAGTTAACATTGGAGCTCTGTTGTAA 3030 0.4376 MENSRRPFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGVSTLPSARFRTTERDVESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVDDMTGAISNSNDDQEMPGRTLGVLRSWVDHNVTNDHRARRDAFNDSVPEKSTGASYGSNELGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMPGQRNGLSNKYSFSSTEASKSMVLDAHHQPAHNITSTQSSVISNSWKNSEEEEYTWDEMNSGLTGHGTSIVSSLSKDTWTADDENLEVEDRIQVKNPFVVNADREIVIESQANEKKQFPASQHHSSLSWQLQEQHSINELNRKAGHSSRFVSALGAIPSNTNASTARMGSRPFLSSATIGLPGIAGPFHSLGAENPSGQSPLQRRSPSPPVSVHYSHPVQNLAEQDLPQTYKASGFLGGLQSPYIKDSSTALPPNIQDGHLQRSQLKNLQGPFSSMTFQARHQQQQLGTSLEVTVKTEKPPVSKVPLVRETKSSMSTGNLPTRLGVRPSRTGGPSPATLISSLSTSALPSSLGPSGDNSSALSKMPQRKAGQPPRLSTLPSTASNVSSASAQTSDTNHNLNPIANLLSSLVAKGLISAETESTSKEPSELLTRLEEESDSITTGNSLPVASISGSAAVPVPSIKDEVDDTARTPISLSESTSPGVVNLIGFEFKHDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQFNRHLEWHATRDREENGLTKAVRWYLKSSDWIVGKAEYVSENDADSVDTYGNEADRSQEDAMVVADENQCLCVLCGELFEDFYCEESGEWMFKGAVYFANSNSNSEMGTGDMRTGLNQVNIGALL 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02127 1009 Gene3D - 82 207 IPR008942 -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 1 27 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 213 273 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 294 318 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 657 753 - -
Vian3g02127 1009 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 982 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vian3g02127 1009 MobiDBLite consensus disorder prediction 1 39 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 242 271 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 664 679 - -
Vian3g02127 1009 SMART 558neu5 85 207 IPR006569 -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 548 568 - -
Vian3g02127 1009 Pfam CID domain 91 200 IPR006569 -
Vian3g02127 1009 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 303 318 - -
Vian3g02127 1009 CDD CID_Pcf11 87 199 IPR047415 -
Vian3g02127 1009 ProSitePatterns Zinc finger C2H2 type domain signature. 872 892 IPR013087 -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 689 721 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 52 78 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 543 568 - -
Vian3g02127 1009 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 729 753 - -
Vian3g02127 1009 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Vian3g02127 1009 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02127 Vian-Chr3 30235417 30241863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02127 844 982 C2H2 Transcription Factor Family AT4G04885 38.298 4.62e-30 126