Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02123 ATGGAAATGGAAGATCACCATCACCACCACCGCCATCACCATCATCAGCATCACCATCACCATCACCACCAGCAGCATCAACATCAACATCAGCACCACTTTGGCGTCAACGATCTCAGGCAAGTCGTCAATGGGCCGAGGACTTCCCACAACGCCTTCCTCTCCATGCCACCCCACCCAACGGCGGAGCTTTTCCCGGGCCACCGGAATCTCACACCCTTGCCCACTCCCCAGCAGCAGCAACAACACTACGAGGTTATGATGTTCGGTCGTGACATAATGCCACCTAGCCTTCACGACTTCACTTCCACACCCCACGATTCTGCTGCTGCTGCTGCTGCTGCAGCAGCAGCCACCATGACTCTACCCACTCCACCCACCTTTGATGCCGAGGGTGCAGGTTGCATCGGTGGGGACCCCTCCACTGGAAGATGGCCCAGACAAGAGACCCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAACCACAAAGGACCCTTATGGGATGAAGTCTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACAAAGGATGGTAAGGCGGGGAGACATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTGTATGGAGAAAACAGTAGCACAGTTTCAGTCCCAGAAACCAATGTTGTTGGCAGCATTCATTTTCAAGCAAGCAGCCATGACCCCTCCCAGACAAATCAAGATAAGTTTCAGTCTCACAATAGCAAGCATTGTGATAGCCTCAGCCTCACCAACTCCACTAACTTTGATACAACATCATCTGATGATGACAATGACCACCACAGTATGGAGAATGAGTCCATAGAGAAGAGGAGAAAGAGGAACAGTGGGAGGAGTTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTTGTGGAGAAGCAGAAGGAGTGGTTGGATAAACTTGTGAAGACACTGGAAGAGAAGGAGAAGGAGAGGATGTTAAGAGAGGAAGAGTGGAGAAAACAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAGTTTTGGGCCAAAGAGAGAGCGTGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTACAAAAGCTAACTGGAAGAGAAATAATGAAGCCTGAAACTCCCAATGATGGTATCAATGTAACGGCTGCTGAAGTTCAAAACCACAGTGAAAACCAGAATAATGAAGATGAGAGTGAAATCTTAAACAGCTGCAATGTTATCAGAGGTGGTGATAGGTGGCCAGAATCTGAAATTACAAGGCTTCAACAGCTGAGAGCTGAGATAGAGACAAGGTTTCCATGCAGCGAAATTTCTGAAGAGGTTTCATGGGAGGTAGTAGCAACCAAAATGGCTTGTTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATCAGTAACTATCCAAGGGAGGGTGAAAAGGAAGGGAGCAAGAAGTGCAAGGAAAACACTAGAAACAGCTTTTTCTTCAAGAACAATGATGATCATCGACAATCTTCCTTATACGACCAAGGAAGTGCCTACTGTGATGATATCAGTGATCAAGGAAAAGAGATTGAGAGGCTACAAACAAATAATAGTTCTTCACCTTCAAAATGCAATGCTGGAAACGTTGATCCCTCTGATAGCTGCTTCCCCTTCTTGATGAGCAGTGAGGGTGGAAACTTGTGGGAGAATTACGGCCTAAAGCTCAACAAAGAAAACCAAAACCACTGA 1827 0.4652 MEMEDHHHHHRHHHHQHHHHHHHQQHQHQHQHHFGVNDLRQVVNGPRTSHNAFLSMPPHPTAELFPGHRNLTPLPTPQQQQQHYEVMMFGRDIMPPSLHDFTSTPHDSAAAAAAAAAATMTLPTPPTFDAEGAGCIGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRHDGKHYRFFRQLEALYGENSSTVSVPETNVVGSIHFQASSHDPSQTNQDKFQSHNSKHCDSLSLTNSTNFDTTSSDDDNDHHSMENESIEKRRKRNSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALQKLTGREIMKPETPNDGINVTAAEVQNHSENQNNEDESEILNSCNVIRGGDRWPESEITRLQQLRAEIETRFPCSEISEEVSWEVVATKMACFGYERSALMCKEKWESISNYPREGEKEGSKKCKENTRNSFFFKNNDDHRQSSLYDQGSAYCDDISDQGKEIERLQTNNSSSPSKCNAGNVDPSDSCFPFLMSSEGGNLWENYGLKLNKENQNH 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02123 608 FunFam Trihelix transcription factor GT-2 446 508 - -
Vian3g02123 608 Pfam Myb/SANT-like DNA-binding domain 144 230 IPR044822 -
Vian3g02123 608 Pfam Myb/SANT-like DNA-binding domain 444 512 IPR044822 -
Vian3g02123 608 CDD GT1 144 209 - -
Vian3g02123 608 FunFam trihelix transcription factor PTL-like 145 207 - -
Vian3g02123 608 ProSiteProfiles Myb-like domain profile. 445 503 IPR001005 -
Vian3g02123 608 MobiDBLite consensus disorder prediction 253 311 - -
Vian3g02123 608 ProSiteProfiles Myb-like domain profile. 137 202 IPR001005 -
Vian3g02123 608 Gene3D - 446 507 - -
Vian3g02123 608 Gene3D - 145 207 - -
Vian3g02123 608 MobiDBLite consensus disorder prediction 8 30 - -
Vian3g02123 608 PANTHER FI21293P1 70 567 - -
Vian3g02123 608 MobiDBLite consensus disorder prediction 1 33 - -
Vian3g02123 608 CDD GT1 445 508 - -
Vian3g02123 608 SMART sant 141 204 IPR001005 -
Vian3g02123 608 SMART sant 442 505 IPR001005 -
Vian3g02123 608 MobiDBLite consensus disorder prediction 289 309 - -
Vian3g02123 608 Coils Coil 332 359 - -
Vian3g02123 608 MobiDBLite consensus disorder prediction 253 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02123 Vian-Chr3 30167300 30170222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02123 29 604 Trihelix Transcription Factor Family AT5G03680 43.140 2.12e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vian3g02123 Myb_DNA-bind_4 7.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02123 - - aprc:113870891 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02123 3 30167300 30170222 Vian3g02123 3 30167300 30170222 ECH
Vian2g02457 2 45123855 45126429 Vian3g02123 3 30167300 30170222 PCT