Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02121 ATGGTTGTCACTTGTCCGTTACAGTTCTATGACAAGTTTAATATCCGCCACAATATTGCGGAACTCCTCGAATACCTGTGGCAAGTCCCTAGTCATCGAAATGCTTGGAGACAGATTGCTAAGGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTGAACTTTCTGATCAATGATAGTATTTATCTTCTGGATGAAAGTTTGAAAAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCTGATACGGTTGAGTGGGAGCAACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGAATAGATATGAAGTTGGCAAACGAAGATGTGAGCATGCTTGCATTTACTTCAGAACAGATTACTGCTCCGTTCCTACTTCCTGAGATGGTTGAGAGAGTGGCTAGCATGCTCAATTACTTCCTGCTGCAATTGGTTGGTCCGCAAAGAAAATCACTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTACTAAAACAGGCTTAG 543 0.4107 MVVTCPLQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLKKILELKELEAEMSDTVEWEQRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02121 180 PANTHER UBIQUITINATION FACTOR E4 8 179 IPR045132 GO:0000151|GO:0030433|GO:0034450
Vian3g02121 180 Pfam Ubiquitin elongating factor core 8 179 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02121 Vian-Chr3 30064747 30065690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02121 8 179 U-box Gene Family AT5G15400 90.698 4.71e-109 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02121 K10597 - gmx:100811444 323.939