Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02118 ATGGCAGAACCATCCACCGCCGCCGCCACCACCACCGCGGTGGACCCTCCGCCGCCAGTTACCAAAAGATGGGCTGACGAAGCGGACGAAGAAACCGAAGCCTCCTCCACCGCCACCGCCACTGAAGCATCTTCCGTCAACCTCGATTCATTAAAAATCGAAGACAACGATAAGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATCCAAAAGGTTACCTCTGGAGAAACGCCGTACACGTCGGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTGGAGATGAAGTTCGAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCAACCCGCCGCACCGCGACCTCATCGCGCAGGCGCACAACGGGTCTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTCTGCCCTACTCGGGAGTTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGGAAGTACACCGGGATTGCGTCGGAATGCGCTGTGCCGACGGATAGCAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCGCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTAGCTCGTGGCTTTGATCAGCAACAGAAAGTGATTCATAACTTCATTCTTCCTCGAGTTATGAATCATATTTTCAGCGCTGGGGCTGTATTTAACCTGATTTGTGATCAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAGCTGAGCAAACCATTGTTTCTGTTATGGCTAAAGCCGGTTCCGTGAAGAAAATGATTCTCACTAAGCAGTATCGATGTGTACATTCAGCTAGCTGTCAATGCACCAAGGGACATTTAAGTGAAGATGTGATATTCTTGGTGTTTCAGCGTTTGAATTGGAACCCCAATCTAATTGCTACACTGTCGTGTGCATGCAAATGGTTTGATGATATTGCAAAGAGGGTTTTATGGAAAGAGTTTTGCAGAACAAGAGCTCCTAAGATGATGCTTGATCTGCAATCCAGTGGAAGTCACAGTGCAGATGGGAACTGGAGGGCTCTGGGGAAGCTTCTCATATTCTGTTCTGGTTGCACACAAGGTGGTTTGTTCGATAATGTTGAGGTTCCTGGTCATTTTGTTAACAAGACTCGGTTTTCTAAAACACTAGGAAAGAGCTTTCTCATGCCACAGTGTCTGAATGATGTTTTGTATGTGTCTGAGCCTTGTGAGCATATTGACCAAGGTGAAGCTGGTGATTTAGGATTCTTCAGAGGAATTTTCAAGTCGTTTGCATCATCAAACGTTAAGAAGATGATAATTAACAGAGGTGCACAGCTCCATCCAACCGAGATTTGCCCCTATTGTAAGGCTAAGTTGTGGAGTATGCTACAGGCCAATATGATTCCACAAACTGCTAAGTGCAGGTTGGGTTCCCATAAAGATTATATTGAGTATTATGTCTGCCTAAATGGTCACTTGCTTGGGGTCTGCACATTGTTACCACTGTCTGATTCAGAGGATGTATCTGAAAATGAGTAA 2145 0.4569 MAEPSTAAATTTAVDPPPPVTKRWADEADEETEASSTATATEASSVNLDSLKIEDNDKNPPKLLDDPDDSSIQKVTSGETPYTSAAKFEDLNLSPELLKGLYVEMKFEKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPTDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDGLTQVLISTDLLARGFDQQQKVIHNFILPRVMNHIFSAGAVFNLICDQKDERLMSKIENHFGTRVAEQTIVSVMAKAGSVKKMILTKQYRCVHSASCQCTKGHLSEDVIFLVFQRLNWNPNLIATLSCACKWFDDIAKRVLWKEFCRTRAPKMMLDLQSSGSHSADGNWRALGKLLIFCSGCTQGGLFDNVEVPGHFVNKTRFSKTLGKSFLMPQCLNDVLYVSEPCEHIDQGEAGDLGFFRGIFKSFASSNVKKMIINRGAQLHPTEICPYCKAKLWSMLQANMIPQTAKCRLGSHKDYIEYYVCLNGHLLGVCTLLPLSDSEDVSENE 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02118 714 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 115 IPR014014 GO:0003724
Vian3g02118 714 PANTHER EID1-LIKE F-BOX PROTEIN 2-RELATED 470 712 IPR040267 -
Vian3g02118 714 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 489 IPR001650 -
Vian3g02118 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 289 IPR027417 -
Vian3g02118 714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Vian3g02118 714 MobiDBLite consensus disorder prediction 34 50 - -
Vian3g02118 714 MobiDBLite consensus disorder prediction 1 76 - -
Vian3g02118 714 SMART ultradead3 106 311 IPR014001 -
Vian3g02118 714 Pfam Helicase conserved C-terminal domain 321 414 IPR001650 -
Vian3g02118 714 Gene3D - 64 302 IPR027417 -
Vian3g02118 714 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
Vian3g02118 714 MobiDBLite consensus disorder prediction 51 69 - -
Vian3g02118 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 403 IPR027417 -
Vian3g02118 714 CDD DEADc_DDX19_DDX25 93 296 - -
Vian3g02118 714 Gene3D - 303 456 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02118 Vian-Chr3 29899119 29920332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02118 79 451 Eukaryotic Initiation Factors Gene Family AT1G72730 33.418 1.53e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02118 K18655 - gmx:100778091 664.07