Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02116 ATGTATTCTCATAATGCAACCGGCAGCAGCAGAGCCTCTTCCGAAACCGCCCGCTACCGCGGCGTGCGCCGGAGGAGCAACGGAAAATGGGTGTCTGAGATCCGTGAGCCAAGAAAGCCCACCAGGATTTGGTTAGGCACATTTCCCACACCTGAAATGGCCGCAGTGGCTTATGACGTGGCAGCTTATGCTCTCAAGGGTAAGGATGCGGAGCTGAATTTCCCTGACTCCGCTTCCTCCCTTCCTGTCCCCGATTCACTCTCGGCGCGTGATATTCAGATGGCGGCAGCCGCTGCGGCGGCGGCTGCCGGAGCTGCGAAGGATGCTATGCAGACGCCAACGTGGAATAATAACTCTTCAGGGGTACAAGAGAAGCAAGCAGGGACGAGTAACGAGTTCGTGGACGAGGATTTGATCTTTGACATGCCTAATGTTCTGGTTAATATGGCTCAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTCTGGAACCTAACAGCCCAGAAAACATGGAACATGAGACAAGCCTGTGGAATTTCCCTTAA 549 0.5373 MYSHNATGSSRASSETARYRGVRRRSNGKWVSEIREPRKPTRIWLGTFPTPEMAAVAYDVAAYALKGKDAELNFPDSASSLPVPDSLSARDIQMAAAAAAAAAGAAKDAMQTPTWNNNSSGVQEKQAGTSNEFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEPNSPENMEHETSLWNFP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02116 182 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Vian3g02116 182 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vian3g02116 182 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vian3g02116 182 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Vian3g02116 182 MobiDBLite consensus disorder prediction 1 16 - -
Vian3g02116 182 MobiDBLite consensus disorder prediction 1 28 - -
Vian3g02116 182 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vian3g02116 182 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vian3g02116 182 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vian3g02116 182 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vian3g02116 182 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 180 IPR045277 GO:0003700
Vian3g02116 182 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02116 Vian-Chr3 29885784 29886858 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02116 19 182 AP2-EREBP Transcription Factor Family AT2G36450 61.272 1.81e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian3g02116 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02116 - - pvu:PHAVU_007G222600g 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02116 3 29885784 29886858 Vian3g02116 3 29885784 29886858 ECH
Vian2g02460 2 45171484 45174672 Vian3g02116 3 29885784 29886858 PCT