Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02114 ATGCAGAAACGAAAACCAGGGAGGAAGAAGTTCCATGAAACACGTCACCCGGTGTACAAAGGTGTGAGACAGAGGAACGGGAAATGGGTGTCCAAGTTACGACAACCTAATAACAAAAACGCACGCGTGTGGCTTGGAACCTTCGCACGCCCCGACATGGCTGCTGTTGCGTACGACGTTGCTGCTTTGGCTTTCAAGGGTGATAACGCTTCCTTGAACTTCCCTGACGCGATTTCTTCATTGCCGCATCTCAACTCGGCTACGTCCTCTGTCAAGGCGATTCAGATTGCCGCGACAGAAGCAGCGGAGAAGCACTTTTCTTGTGCCGAGTTTCAAAAGCTGGGAGACTATCTTTCTTCAGAGGGAGGTTCTGGAAGCTTCTCTTGGGATGAAGATTGTTCGGAGCTGTTATCTGAAGAGAGTTCTAGAAAGTTCTTTTGGGATGAGGAAGAGGTGTTTAACACGCCGGAGTTGTTGAACAGCATGGCGGAAGCGTTGATCATTACACCTCCTGCTTTGCAGAAAGGGTTCAATTGGGTTGGTGGGGAAACCACAGTAGATTTGACTCTAAACGCGATCTGCGATGACGGCATTAATCGCAGCGTGAGGCTTCGTGATGGTGCAAACTGCAGCGACGCGAGGAAGATGGTGAGGACGAAGGAGAAGGTGGCGGGCACCATTTCCTTTGCCCATAAGTTGATCTTGGAATTTCAGCTCCCGGACAAAAAAAGTGGGGGTGCCACCAAGTGGATGACTGCCAGAATTGGAAACCAAAGTGATAAAATGTCAAATATATCAAAGGCTATAAGAGCAGAGTCAAATACTTTGGAAGTCGCGTGCTCATCATACTTCGATTACTGTAGCAAGACATTTGCTGAAATTGCACCACACCAAGATGATGTCATCGCAGCAGAAACCAGAAAAGATGTGGCAACACCGATGACCATTGAAGAAAGGAACCGAGAAGGGGAAGACAAAAACAACACATCCACAATAAAGCACCGGCCCAAGGTCATAAAAGAAGGCCAACCAAAAAGAACAATCAAGAAAGCCGCTGCAGAGACTGTTCAATCTAAAGAAAACCAAGCTGACAAGAGGAAGGCGAGGAAAGGATTGAACACAACTTCTCCACAAACAGAAGTGACAGGAGAATGGACATCGGGGCCTAAATCAACCGTAAAGACATGTAAAAGGTCCTTGAGTTTTGGGAGCAAAGAGCAAGCAATAGACGATCCTGGACGCAGAGAAAATATGCTCTTTGCCAATGCCAGCAGCTCAAGGAATTGGGTGGCTGATCATAATGGACTTCAAGAGTGTCCAAATAACTCCATTGGCAGAGACGGTTGGAGCACAGGATGTGGATTACAAGCTGTCGAAGAAAAGGAGAAGCGTCAAGGGAGAATTTTAGAGGCGCCACATAAATCTTCTGTGACTGCCACCAAAGATTTCCAACCGGCAACATTCTTACAAGATGCCAGATCACATTCTTATATGTCAAGTCCCAAGTGCTAA 1512 0.4709 MQKRKPGRKKFHETRHPVYKGVRQRNGKWVSKLRQPNNKNARVWLGTFARPDMAAVAYDVAALAFKGDNASLNFPDAISSLPHLNSATSSVKAIQIAATEAAEKHFSCAEFQKLGDYLSSEGGSGSFSWDEDCSELLSEESSRKFFWDEEEVFNTPELLNSMAEALIITPPALQKGFNWVGGETTVDLTLNAICDDGINRSVRLRDGANCSDARKMVRTKEKVAGTISFAHKLILEFQLPDKKSGGATKWMTARIGNQSDKMSNISKAIRAESNTLEVACSSYFDYCSKTFAEIAPHQDDVIAAETRKDVATPMTIEERNREGEDKNNTSTIKHRPKVIKEGQPKRTIKKAAAETVQSKENQADKRKARKGLNTTSPQTEVTGEWTSGPKSTVKTCKRSLSFGSKEQAIDDPGRRENMLFANASSSRNWVADHNGLQECPNNSIGRDGWSTGCGLQAVEEKEKRQGRILEAPHKSSVTATKDFQPATFLQDARSHSYMSSPKC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02114 503 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 183 IPR045277 GO:0003700
Vian3g02114 503 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Vian3g02114 503 MobiDBLite consensus disorder prediction 352 392 - -
Vian3g02114 503 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vian3g02114 503 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Vian3g02114 503 MobiDBLite consensus disorder prediction 372 392 - -
Vian3g02114 503 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vian3g02114 503 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vian3g02114 503 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Vian3g02114 503 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vian3g02114 503 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02114 Vian-Chr3 29834067 29841844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02114 3 188 AP2-EREBP Transcription Factor Family AT4G25470 42.105 1.25e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian3g02114 AP2 9.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02114 - - var:108322433 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02114 3 29834067 29841844 Vian3g02114 3 29834067 29841844 ECH
Vian3g02114 3 29834067 29841844 Vian2g02460 2 45171484 45174672 PCT