Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02084 ATGGCCGCAGCTGCCCGCCCCCTTGTCACCATCCAGTCCCTCGAGGGCGACATGGCCACCGATGCCTCCGCCACCGTTCCCATCCCCGACGTCATGAGGGCCTCCATCCGCCCTGACATCGTCAACTTCGTACACTCCAACATCTCCAAGAACAGCCGCCAGCCCTACGCCGTCAGCCGCCGCGCCGGCCACCAAACATCCGCCGAGTCCTGGGGAACAGGTCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGTGGAGGAACCCACCGTGCCGGCCAGGGAGCCTTCGGCAACATGTGCCGAGGTGGCCGCATGTTTGCCCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGCTACGCCGTTGTCTCTGCCATCTCTGCCTCCGCCATCCCTTCTCTCGTCCTTGCCCGCGGCCACCGCATCGAGACCGTCCCGGAACTCCCCCTCGTTGTCAGCGACTCTGCTGAAGGAGTCGAGAAAACCAAGGAAGCAATCAAAGTTTTGAAACAGATCGGTGCCTTCCCTGACGCTGAAAAGGCGAAAGACAGCCACGGCATTCGTCCTGGAAAGGGAAAAATGCGCAACCGTCGCTACATCTCCCGAAAGGGTCCACTGATCGTTTACGGAACAGAAGGAGCTAAAGCTGTGAAGGCTTTCCGTAACGTCCCTGGCGTTGAGGTGGCCAATGTTGAGAGACTCAACCTTCTTAAGCTCGCTCCCGGTGGTCACCTTGGGCGTTTTGTGATTTGGACCAAGTCTGCTTTTGAGAAACTTGACTCCATTTATGGGTCCTTTGATAAGCCCAGTGAAAAGAAGAAGGGTTACCTGCTGCCAAGGTCCAAGATGGTGAACTCCGACCTCTCCAGGATTATTAATTCTGACGAGGTTCAGTCCGTTGTGAAGCCCATTAAGAAGGACGTGACTCGGGCCACGCTCAAGAAGAACCCTCTCAAGAATCTCAATGTCATGCTCAAGCTCAATCCCTATGCCAAGACCGCTAAGAGGATGGCTTTGCTTGCTGAGGCCCAGCGTGTTAAGGCCAAGAAGGAGAAGCTCGATAAGAAGAGGAAGACTGTGTCCAAGGAGGAGGCCTCTACCATCAGAGCTGCAGGAAAGGCATGGTATCACACTATGGTGTCAGATTCGGATTATACAGAATTCGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTAA 1218 0.5591 MAAAARPLVTIQSLEGDMATDASATVPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAISASAIPSLVLARGHRIETVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLSRIINSDEVQSVVKPIKKDVTRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKTVSKEEASTIRAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02084 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vian3g02084 405 Coils Coil 342 369 - -
Vian3g02084 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Vian3g02084 405 MobiDBLite consensus disorder prediction 54 96 - -
Vian3g02084 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Vian3g02084 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Vian3g02084 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vian3g02084 405 MobiDBLite consensus disorder prediction 54 73 - -
Vian3g02084 405 FunFam 60S ribosomal protein L4 3 308 - -
Vian3g02084 405 SUPERFAMILY Ribosomal protein L4 14 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02084 Vian-Chr3 27448592 27450614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02084 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.663 0.0 691
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02084 3 27448592 27450614 Vian3g02084 3 27448592 27450614 ECH