Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02083 ATGAACTCCAACACTTCGAATTCTCAGTCAATGGCGGTGGCGGCGAGTGATGTGTCGGGGAAGAAGGTGAGGAAGCCTTACACCATAACCAAGTCAAGGGAGAGTTGGACCGAGGAAGAGCACGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGGGATTGGAAAAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCTCATGTGCCTCCTCCCCGTCCTAAGCGAAAAGCTGCTCATCCTTACCCACAAAAAGCATCAAAAAATGTTTTGGTACCACTACCAGCTTCCATTGGTTATACTTCAACAAACATGCTTGCACCTGGCTTTGCCACATGGGATGAAACCTCCTTGCTGATGAATACAGGAGTCAGTAAATCCATGACCTGTCAGGATGAACTCAACAGTATTCGTGGAAATGAAGGCATGCCTGATATTGGATCAAAGGGGATAACAAAGATTACCAACAGCATTCTTAGTGGTGTCAGAAATTCTACTAGAACACTACAGACTCCTGAGATACCAAAGCAAGGGAAACAAGCTCCGGTTATTCATGGTTTACCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGATACAAATGACCATGTCCAAAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTATTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGCATTGTCAGCATATGATGTGAATGGCATGGCAGTAGGAGTTGGTACAGGAATTGATGTGAAGAAGCAGACAAATGATCTATCATGTCAAACTGCTTAA 894 0.4172 MNSNTSNSQSMAVAASDVSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYTSTNMLAPGFATWDETSLLMNTGVSKSMTCQDELNSIRGNEGMPDIGSKGITKITNSILSGVRNSTRTLQTPEIPKQGKQAPVIHGLPDFAEVYSFIGSVFDPDTNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKALSAYDVNGMAVGVGTGIDVKKQTNDLSCQTA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02083 297 MobiDBLite consensus disorder prediction 1 15 - -
Vian3g02083 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Vian3g02083 297 Gene3D - 36 83 - -
Vian3g02083 297 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Vian3g02083 297 SMART sant 32 80 IPR001005 -
Vian3g02083 297 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Vian3g02083 297 ProSiteProfiles SANT domain profile. 31 84 IPR017884 -
Vian3g02083 297 MobiDBLite consensus disorder prediction 1 24 - -
Vian3g02083 297 CDD SANT 35 78 IPR001005 -
Vian3g02083 297 Pfam Myb-like DNA-binding domain 33 78 IPR001005 -
Vian3g02083 297 PANTHER SWI/SNF COMPLEX-RELATED 5 256 - -
Vian3g02083 297 FunFam protein REVEILLE 6 isoform X1 35 83 - -
Vian3g02083 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02083 Vian-Chr3 27394266 27399102 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian3g02083 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02083 - - vra:106754423 554.288