Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02081 ATGCCGCCGAAGCAGCAATCCAAAGCTGATTTAGCGAAGAAGCAGAAGATTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTTCAGAAGTATGTCCAGAACCTTAAGCAATCAGTGCAGCCCAGGGTCGATCCTGCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCTGTTACTCAGCCTAAAGTGCCAGTTGGCGTTGATCCCAAGTCTATAGTGTGTGAGTTTTATAAAGTCGGGCAATGCGCCAAAGGCTTCAAGTGCAAGTTTTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAAATTGACATTTATAGTGATAAGCGTGACCAGGAAACAATGGAGGACTGGGATCAAGAGACCTTGGAGAAGGCGGTGGAGTCGAATAAATCTTATTATAATCAGAATAAAGCGACTGACATTGTATGCAAATACTTTTTGGATGCTGTAGAAAAGAAGCAATACGGGTGGTTATGGGAATGCCCCAATGGTGGTAAGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAAGCTGACAAATTATCAATCGAGGAGGAGATTGAAAATCAGCGTGCCAAAGTGAAAACCACGACTCCTATGACTCCTGACTTATTCTATGAATGGAAGAAGAAGAAGATAGAAGAAAGAGATGCCAATTTAGCCGCACAGCAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCAAATGCTAGCTTGTTTGTGGACGATGCAGAAGCATATGAAAAATACCAGAGAGAACCAGAATATGATGAAACTGGACAGAATGGTAATGGGAACGCTACCCAAGATGGTCCTAGCACCTCAGCCGGTGCTGATGGTGAAGCTCTTGATGACATAGATGATGATGACGATGAGTTGGACTTGGATGAGTTAAATGAATTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATAAAGGAAACGGGAGCTGAAGCTTAA 1083 0.4294 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRVDPAKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSIVCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKAVESNKSYYNQNKATDIVCKYFLDAVEKKQYGWLWECPNGGKNCHYRHALPPGYVLKSQMKALLEEEADKLSIEEEIENQRAKVKTTTPMTPDLFYEWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYEKYQREPEYDETGQNGNGNATQDGPSTSAGADGEALDDIDDDDDELDLDELNELEASLAKTSIQIKETGAEA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02081 360 MobiDBLite consensus disorder prediction 298 316 - -
Vian3g02081 360 Coils Coil 246 266 - -
Vian3g02081 360 Coils Coil 53 73 - -
Vian3g02081 360 Coils Coil 206 228 - -
Vian3g02081 360 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Vian3g02081 360 SMART c3hfinal6 160 195 IPR000571 GO:0046872
Vian3g02081 360 Coils Coil 339 359 - -
Vian3g02081 360 MobiDBLite consensus disorder prediction 293 339 - -
Vian3g02081 360 Pfam DRG Family Regulatory Proteins, Tma46 215 297 IPR032378 -
Vian3g02081 360 MobiDBLite consensus disorder prediction 322 339 - -
Vian3g02081 360 Gene3D - 87 203 - -
Vian3g02081 360 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 357 - -
Vian3g02081 360 Gene3D - 204 279 - -
Vian3g02081 360 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Vian3g02081 360 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Vian3g02081 360 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian3g02081 DFRP_C 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02081 - - gmx:100778701 592.423