Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02077 ATGACAAGGGTTGTCCAGATGAGTGTCGATGGTGACAGCAAAGAGCTGAAAGAACTGAGTCAGCGCTTACGAGATGGGAAGAAGATTGCTGGCGGGGAACACGAGTTATGCGAGGGTGATGAAGTGAAATGCAATGGATTAGCTGAGGGAGTTAAGGCTGGACAGGAGGGGACTGTGGAGTCCTCTGCTCAGCAGCATATTCCACAGCCTCAAGGGGCAATAATATGTTGGGAGAGATTTTTGCATATTAGATCCCTTAAGGTTTTGCTTGTGGAGATTGATGACTCTACTCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCTAACGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTCATTTTAACTGAAGTGGCAATGCCTGGTTTATCAGGCATTGGTCTTCTGTACAAGATTATGGGCCACAAAACTCGGAGAAATATTCCAGTAGTTATGATGTCATCTCTTGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCCGTTGACTTTCTAGTCAAACCCATTCGGAAGAATGAGCTCAAAAACCTGTGGCAGCACGTTTGGAGAAGATGTCACAGTTCTAGCGGGAGTGGCAGTGAAAGTGGAACGCAAACACAGAAGTCTGTTAAATCAAAGAGTCTTGAGAAGTCTGAGAATAATTCTGGGAGCAACGACGAAGATGATAATGGAAGTGTAGGCCTGGATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCATGGACCAAACGTGCTGTAGAAGTTGATAGTCCCAAACCTGTCTCTCAGTGGGATCAAATAGCTGAGTGCCCTGACAGTACTTGTGCTCAAGTTGTTCACTCCAATGCTGAACTCGGTGGGAACAAGGTGGCTTCCCTAGGTGCAAAGGAGTGTTCAGAACAGAAGGAACAACTTGTCAAAACTGCAGGTTCTAAACATAGCAATGCACCTGATGCCGCCCCCTCTAAATCACTGGACCTTAATTGTGAAAATCAATCAATCAAGCTAAGGTGCAAAGGTTTATCATTGTCTGAAGCCATTACTAGCAGTTCTGATTATCAGATGCATAGTGGAGAATTTGAAGCCTTAAATAAAAGGCTGAAGTCCTCAGATAGTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGACCTTAGTTTAAAGAGGCCTAGAGGAGTTAAAGATACTGGTATTACAATTCAGGATGATAGGAATGTCTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACGCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCCTATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCATGATATTCAATCTCATTCAAGCGGCAATCTTCCTAACCAAAATTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTATGCTAAATCTGCAGTTATAAGTGAGCTAGCAGTGGCTTCAACCAAATGTTTGTACCAAACATCCGCTTTCCAGCCTATAAAAAACAACCTTGTCTGTAAATCTCAACAAGTCATCTTACATAACACTGAAGATAAAGCAGCAACAATGCTGGCACTACCTAAAGTAGACAGACATAGAGATTCTGCTGCTCCAGACTTCCATCTCCATTATGAAAACAATAACTGTACTGATGACATGCACCAGCTGCCACCTGATCATGATGCTGAATCTGCAAAGAAATTGGCTACTGCTGCTACTCCACATTGTGGTTCATCAAATGTGGTAGAAGTGCTAGTTGAAGGTAATGTTGGAAACCTCAGTATCAATAGAAGTGTTTCAGGAAGCAACAATGGAAGCAATGGCCAAAATGGGGGCAGCACAGCAGTTAATGCTGGAGGAACAAACATGGAAAGCAACAATGGACTCCCTGGGAATAGTGGCAGTGGCGATGCTAGTGGAAGTAGAAGTGCCAACAGAGGAGATCAAAACAAGACTTCTCAAAGGGAAGCAGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAAAGAAAGGAGAGGTGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAACAACGACCTCGACTTCGTGGACAATTTGTTCGACAGTCGTCTAACGAAAAGACAAGTGATGCAACGACAGAGAGGTGA 2235 0.4237 MTRVVQMSVDGDSKELKELSQRLRDGKKIAGGEHELCEGDEVKCNGLAEGVKAGQEGTVESSAQQHIPQPQGAIICWERFLHIRSLKVLLVEIDDSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLILTEVAMPGLSGIGLLYKIMGHKTRRNIPVVMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSENNSGSNDEDDNGSVGLDNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQIAECPDSTCAQVVHSNAELGGNKVASLGAKECSEQKEQLVKTAGSKHSNAPDAAPSKSLDLNCENQSIKLRCKGLSLSEAITSSSDYQMHSGEFEALNKRLKSSDSENKGTNNDEELPSLDLSLKRPRGVKDTGITIQDDRNVLRRSDQSAFSRYNAASNAKKSPTGCVGSNSPYNNSLEVTKKDSSHDIQSHSSGNLPNQNSNGASNNIDMGSTTNNAYAKSAVISELAVASTKCLYQTSAFQPIKNNLVCKSQQVILHNTEDKAATMLALPKVDRHRDSAAPDFHLHYENNNCTDDMHQLPPDHDAESAKKLATAATPHCGSSNVVEVLVEGNVGNLSINRSVSGSNNGSNGQNGGSTAVNAGGTNMESNNGLPGNSGSGDASGSRSANRGDQNKTSQREAALTKFRQKRKERKERCFHKKVRYQSRKKLAEQRPRLRGQFVRQSSNEKTSDATTER 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02077 744 ProSiteProfiles Response regulatory domain profile. 87 205 IPR001789 GO:0000160
Vian3g02077 744 MobiDBLite consensus disorder prediction 696 714 - -
Vian3g02077 744 SMART REC_2 86 201 IPR001789 GO:0000160
Vian3g02077 744 Pfam CCT motif 686 731 IPR010402 GO:0005515
Vian3g02077 744 MobiDBLite consensus disorder prediction 386 411 - -
Vian3g02077 744 MobiDBLite consensus disorder prediction 440 466 - -
Vian3g02077 744 MobiDBLite consensus disorder prediction 210 227 - -
Vian3g02077 744 MobiDBLite consensus disorder prediction 476 495 - -
Vian3g02077 744 Pfam Response regulator receiver domain 88 199 IPR001789 GO:0000160
Vian3g02077 744 MobiDBLite consensus disorder prediction 440 495 - -
Vian3g02077 744 ProSiteProfiles CCT domain profile. 689 731 IPR010402 GO:0005515
Vian3g02077 744 PANTHER TWO-COMPONENT RESPONSE REGULATOR 86 323 IPR045279 GO:0009736
Vian3g02077 744 MobiDBLite consensus disorder prediction 628 744 - -
Vian3g02077 744 CDD psREC_PRR 88 191 - -
Vian3g02077 744 Gene3D - 85 244 - -
Vian3g02077 744 SUPERFAMILY CheY-like 84 210 IPR011006 -
Vian3g02077 744 MobiDBLite consensus disorder prediction 210 282 - -
Vian3g02077 744 MobiDBLite consensus disorder prediction 241 271 - -
Vian3g02077 744 MobiDBLite consensus disorder prediction 628 688 - -
Vian3g02077 744 FunFam Two-component response regulator-like PRR37 86 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02077 Vian-Chr3 27194247 27234585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02077 162 733 Response Regulator Gene Family AT5G02810 48.392 1.67e-113 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vian3g02077 Response_reg 4.7e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02077 K12129 - gmx:100796933 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02077 3 27194247 27234585 Vian3g02077 3 27194247 27234585 ECH