Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02062 ATGGCGGTTCCAGGGAGGCGCAATGGCATGAACGACGACGAAGAGGACATAGACGAACACGCCCTTTTCGAGGAAGAAGGTTTCGTCGAAGACTACACCGATACCCCTCCTCACCTCCGCGACCTCTCCGCCGCCGCGCAGGTTGGCGACATCAACGCCCTCCGCCTCGCTCTAGATAACTTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACTGCTCTTCATTTGACATGTTTGTATGGCCATTTGGCTTGTGCCCAGCTGCTAATAGAAAGAGGAGCAAACATTGAGGCTAAGGATGAAGACGGTGCAATTCCTTTGCATGATGCTTGTGCTGGAGGATTTACTGAGATAGTCCAACTGCTACTAAACAGAGCAAATAACGCAGAACATATAAAGAGAATGCTGGAATCAGTTGATTCTGAGGGTGATACTCCTCTTCATCACGCAGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGGGCATCGTCCACAAAGGAAAACTTATACGGAAAGACCCCGGCAGATTTACCTGATCAGAACACAGATGCTCGGAGTTTGCTTCACGCTGCCGTCCCTGCCATGGCATGTTAA 615 0.4976 MAVPGRRNGMNDDEEDIDEHALFEEEGFVEDYTDTPPHLRDLSAAAQVGDINALRLALDNLTGSIDEPVEDGDTALHLTCLYGHLACAQLLIERGANIEAKDEDGAIPLHDACAGGFTEIVQLLLNRANNAEHIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSNGASSTKENLYGKTPADLPDQNTDARSLLHAAVPAMAC 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02062 204 Gene3D - 106 198 IPR036770 -
Vian3g02062 204 ProSiteProfiles Ankyrin repeat region circular profile. 104 130 - -
Vian3g02062 204 Pfam Ankyrin repeats (3 copies) 104 172 IPR002110 GO:0005515
Vian3g02062 204 Gene3D - 25 105 IPR036770 -
Vian3g02062 204 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Vian3g02062 204 SUPERFAMILY Ankyrin repeat 33 184 IPR036770 -
Vian3g02062 204 ProSiteProfiles Ankyrin repeat region circular profile. 144 170 - -
Vian3g02062 204 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Vian3g02062 204 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Vian3g02062 204 FunFam BRCA1-associated RING domain protein 1 36 203 - -
Vian3g02062 204 SMART ANK_2a 71 100 IPR002110 GO:0005515
Vian3g02062 204 SMART ANK_2a 104 133 IPR002110 GO:0005515
Vian3g02062 204 SMART ANK_2a 144 173 IPR002110 GO:0005515
Vian3g02062 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 35 201 - -
Vian3g02062 204 Pfam Ankyrin repeat 71 102 IPR002110 GO:0005515
Vian3g02062 204 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02062 64 200 Ion Channels AT2G25600 30.120 1.79e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02062 - - gmx:100527544 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02062 3 26558115 26560252 Vian3g02062 3 26558115 26560252 ECH